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Table 5 Comparison between cell lines--total of preferred classes

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Factor

Cell line

 

GM128

K562

Other

GABP

0.991

0.976

 

NRSF

0.844

0.862

 

SRF

0.851

0.794

 

JunD

0.293

  

cFos

 

0.603

0.475

Max

 

0.675

 

SREBP1

  

0.742

STAT1

 

0.638

0.519

TR4

 

0.870

0.871

GATA1

 

0.736

 

NF-E2

 

0.536

 

TCF7L2

  

0.483

NFKB

0.686

  

YY1

  

0.876

ZNF263

 

0.856

 

Count

5

10

6

Average

0.733

0.755

0.661

Confidence Limit

0.477

0.674

0.503

  1. This table gives a comparison between cell lines using a representative transcription factor for each family from Table 3. The last row gives the lower 95% confidence limit for the mean of the values in the column based on a one-sided t-test. The calculation includes the anomalously low value for JunD. We conclude that the choice of cell line does not affect the conclusion that TFBSs mainly occur in the preferred classes.