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Table 5 Comparison between cell lines--total of preferred classes

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Factor Cell line
  GM128 K562 Other
GABP 0.991 0.976  
NRSF 0.844 0.862  
SRF 0.851 0.794  
JunD 0.293   
cFos   0.603 0.475
Max   0.675  
SREBP1    0.742
STAT1   0.638 0.519
TR4   0.870 0.871
GATA1   0.736  
NF-E2   0.536  
TCF7L2    0.483
NFKB 0.686   
YY1    0.876
ZNF263   0.856  
Count 5 10 6
Average 0.733 0.755 0.661
Confidence Limit 0.477 0.674 0.503
  1. This table gives a comparison between cell lines using a representative transcription factor for each family from Table 3. The last row gives the lower 95% confidence limit for the mean of the values in the column based on a one-sided t-test. The calculation includes the anomalously low value for JunD. We conclude that the choice of cell line does not affect the conclusion that TFBSs mainly occur in the preferred classes.