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Table 6 Distribution of transcription factor binding sites across mosaic classes for sites more than 1500 bases from a TSS

From: Most transcription factor binding sites are in a few mosaic classes of the human genome

Data Source Factor Q Sites Pair 2 Pair 7 Pair 9 Pair 14 Total
Note 1 Note 2 Note 3 Note 4 Note 5 Note 5 Note 5 Note 5 Note 6
HAIB-K562 GABP 0.23 593 0.087 0.126 0.254 0.458 0.925
HAIB-K562 NRSF 0.85 1714 0.261 0.254 0.264 0.069 0.849
HAIB-K562 SRF 0.76 280 0.424 0.098 0.119 0.112 0.752
YALE-GM128 NFKB 0.85 2267 0.336 0.169 0.132 0.021 0.658
YALE-HCT116 TCF7L2 0.91 3075 0.280 0.116 0.057 0.012 0.466
YALE-HepG2 SREBP1 0.57 2844 0.283 0.132 0.135 0.065 0.615
YALE-K562b GATA1 0.89 3011 0.330 0.231 0.139 0.021 0.721
YALE-K562b TR4 0.35 191 0.144 0.162 0.322 0.110 0.738
YALE-K562b ZNF263 0.80 4079 0.051 0.221 0.501 0.073 0.845
YALE-K562 cFos 0.94 3523 0.290 0.190 0.107 0.011 0.598
YALE-K562 Max 0.77 2453 0.237 0.121 0.193 0.065 0.615
YALE-K562 NF-E2 0.93 4380 0.275 0.152 0.086 0.011 0.524
YALE-NT2D1 YY1 0.61 1804 0.338 0.203 0.189 0.099 0.828
YALE-K562-Ia30 STAT1 0.86 898 0.414 0.111 0.067 0.019 0.611
ORegAnno CTCF 0.90 4368 0.212 0.192 0.363 0.134 0.901
TRANSFAC sp1 0.41 281 0.063 0.151 0.529 0.206 0.949
TRANSFAC p53 0.95 579 0.271 0.210 0.075 0.004 0.560
Average of above     0.253 0.167 0.208 0.088 0.715
Genome proportions     0.134 0.071 0.042 0.009 0.256
Model proportions     0.134 0.069 0.042 0.009 0.255
Promoter region     0.170 0.069 0.128 0.233 0.600
  1. Note 8) Column 3 gives the proportion, Q, of sites that are more than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.