In silico AFLP results obtained using 84, 100 and 100 primer combinations for the species Bacillus thuringiensis ser. konkukian, Arabidopsis thaliana and Aedes aegypti , respectively. A) Length distribution of the number of AFLP peaks obtained between 50 and 500 bp. B) Relationship between the homoplasy rate and the number of peaks per AFLP profile. C) Relationship between the frequency of homoplasic peaks and fragment length. D) Distribution of the number of co-migrating fragments in peaks (Y axis truncated at 80, real numbers indicated above each bar).