Table 1 Components in the template models
From: Computational prediction of the osmoregulation network in Synechococcus sp. WH8102
Organism | Gene | Symbol | Function |
|---|---|---|---|
| Â | AB094497 | GsmT | Betaine synthetases with glycine as the |
A. halo | AB094498 | SdmT | substrate |
| Â | BAB69459 | apNhaP | Na+/H+ antiporter |
| Â | cg1016 | BetP | Betaine transporter |
C. glut | cg0864 | MtrB | Two-component system that senses osmotic |
| Â | cg0862 | MtrA | stress |
| Â | b0019 | NhaA | Na+ antiporter |
| Â | b1186 | NhaB | Â |
| Â | b0020 | NhaR | Na+/H+ antiporter regulator |
| Â | b3290 | TrkA | Predominant K+ channel |
| Â | b1291 | TrkE | Â |
| Â | b1363 | TrkG | Â |
| Â | b3893 | TrkH | Â |
| Â | b3747 | Kup | K+ channel playing a major role in neutral or slightly alkaline environments |
| Â | b0698 | KdpA | High-affinity K+ channel playing a major role |
| Â | b0697 | KdpB | under osmotic stress |
| Â | b0696 | KdpC | Â |
| Â | b4513 | KdpF | Â |
| Â | b0694 | KdpE | Two component system activating Kdp |
E. coli | b0695 | KdpD | expression under osmotic stress |
| Â | b0311 | BetA | Betaine synthetases with proline as the |
| Â | b0312 | BetB | substrate |
| Â | b0314 | BetT | Proline transporter |
| Â | b1896 | OtsA | Trehalose synthetases with UDPG as the |
| Â | b1897 | OtsB | substrate |
| Â | b2677 | ProV | Betaine/proline transporter |
| Â | b2678 | ProW | Â |
| Â | b2679 | ProX | Â |
| Â | b2938 | SpeA | Arginine synthetase |
| Â | b3404 | EnvZ | Two-component system regulating OmpC and |
| Â | b3405 | OmpR | OmpF under osmotic stress |
| Â | b0929 | OmpF | Porin-encoding genes |
| Â | b2215 | OmpC | Â |
| Â | b4111 | ProP | Betaine/proline transporter |
|  | b2741 | σ38 | RNA polymerase, Sigma 38 (Sigma S) factor |
| Â | b1126 | PotA | Putrescine/spermidine transporter |
| Â | b1125 | PotB | Â |
| Â | b1124 | PotC | Â |
| Â | b1123 | PotD | Â |
| Â | b0854 | PotF | Putrescine transporter |
| Â | b0855 | PotG | Â |
| Â | b0856 | PotH | Â |
| Â | b0857 | PotI | Â |
P. mari | ABX75857 | GpgS | Glucosylglycerate synthetase |
| Â | ABX75858 | GpgP | Â |
| Â | sll0689 | NhaS3 | Na+/H+ antiporter |
| Â | sll0493 | KtrA | Predominant K+ transporter playing a major |
| Â | slr1509 | KtrB | role in K+ uptake under osmotic stress |
| Â | slr1508 | KtrE | Â |
| Â | slr1728 | KdpA | High-affinity K+ channel playing a minor role |
| Â | slr1729 | KdpB | in K+ uptake under osmotic stress |
| Â | slr1730 | KdpC | Â |
PCC6803 | slr1731 | KdpD | Two component system activating Kdp expression under osmotic stress |
| Â | sll0045 | SpsA | Sucrose synthetase |
| Â | slr1312 | SpeA | Arginine synthetase |
| Â | slr0662 | SpeA | Â |
| Â | slr0747 | GgtA | Glucosylglycerol/trehalose/sucrose |
| Â | slr0529 | GgtB | transporter |
| Â | slr0530 | GgtC | Â |
| Â | slr0531 | GgtD | Â |
| Â | sll1546 | GgpS | Glucosylglycerol synthetases |
| Â | slr0746 | GgpP | Â |
| Â | sll0306 | RpoD | RNA polymerase, Sigma 70 (sigma D) factor |