Figure 3

Variation views. Views available in the variation tab are titled with the name of the link leading to each set of information. The data in the figure correspond to rs2476601. The gene/transcript panel shows an Ensembl gene with this variant where it has different effects depending on the splice variant. Allele frequencies have been measured in four HapMap populations, as shown in the population genetics panel. The NHGRI associates Crohn's disease, Rheumatoid Arthritis and Type I Diabetes to this SNP, displayed in phenotype data. The phylogenetic context panel shows a common allele at this position in the reference sequences for chimpanzee (Pan troglodytes), orangutan (Pongo pygmaeus), macaque (Macaca mulatta), mouse (Mus musculus), rat (Rattus norvegicus), horse (Equus caballus), dog (Canis familiaris), cow (Bos taurus), opossum (Monodelphis domestica), and chicken (Gallus gallus). Platypus (Ornithorhynchus anatinus) shows a different nucleotide (T).