Table 2 List of Ensembl tables generated and dbSNP tables used
Ensembl tables generated | dbSNP tables used |
|---|---|
source | Â |
variation | SNP, SNPAncestralAllele |
variation synonym* | SubSNP, SNPSubSNPLink, ObsVariation |
| Â | Batch, UniVariAllele |
population/sample/population structure/sample synonym | PopClassCode, PopClass, PopLine |
individual/sample/individual population/sample synonym | SubmittedIndividual, Individual PedigreeIndividual |
allele | Allele, AlleleFreqBySsPop, SubSNP |
flanking sequence | SubSNPSeq5, SubSNPSeq3, SNP |
individual genotype | SubInd, ObsGenotype, SubmittedIndividual |
population genotype | GtyFreqBySsPop, UniGty, Allele |
variation feature | SNPContigLoc, ContigInfo |