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Table 3 Breakdown of failed variants by type for each species

From: Ensembl variation resources

Name

Type 1

Type 2

Type 3

Type 4

Type 5

Total number

Homo sapiens

132,037

494,262

37,456

3,359

13,768

680,882

Pan troglodytes

0

0

7

0

2,885

2,892

Pongo pygmaeus abelii

0

0

0

0

0

0

Mus musculus

155,456

299,923

0

0

25,691

481,070

Rattus norvegicus

1,475

482

1

0

216

2174

Canis familiaris

27,518

15,660

55

0

11,986

55,219

Bos taurus

9,679

103,072

0

0

490

113,241

Ornithorhynchus anatinus

0

4849

0

0

0

4,849

Gallus gallus

11,070

88,558

0

0

229,878

329,506

Danio rerio

0

0

0

0

44,841

44,841

Tetraodon nigroviridis

0

0

0

0

0

0

Taeniopygia guttata

0

0

0

0

0

0

  1. Type 1: Variant maps to more than 3 different locations
  2. Type 2: None of the variant alleles match the reference allele
  3. Type 3: Variant has more than 3 different alleles
  4. Type 4: Loci with no observed variant alleles in dbSNP
  5. Type 5: Variant does not map to the genome