Table 1 Predicted amino acid sequences and length of the junctional diversity of the cDNAs. The classification of the TRBD, TRBJ and TRBC genes is indicated.
CDR3 sequence | ||||||||
|---|---|---|---|---|---|---|---|---|
CLONE | V | N(D)N | J | Ac.N | D segment | J segment | C segment | CDR3 length |
pSTMos.01 | ASSQ | A(GT)VI | SYEQYFGPGTKLTVV | FM993913 | D1 | J2.7 | C2 | 14 |
pSTMos.02 | ASSPT | NIAY | SYEQYFGPGTKLTVV | FM993914 | -- | J2.7 | C2 | 14 |
pSTMos.03 | ASSQ | SD(G) | EQYFGPGTKLTVV | FM993915 | D3 | J2.7 | C3 | 10 |
pSTMos.04 | ASSP | PP(GQ)V | NTEVFFGKGTRLTVV | FM993916 | D1 | J1.1 | C1 | 14 |
pSTMos.05 | ASSQG | R(D)L | SNNPLYFGGGTRLLVL | FM993917 | D1 | J2.3 | C3 | 14 |
pSTMos.06 | ASSQG | P | NTDPLYFGAGSKLTVL | FM993918 | -- | J2.2 | C2 | 12 |
pSTMos.07 | ASSR | VGTME(GQ)I | YNSOLQFGIGTRLTVT | FM993919 | D1 | J1.6 | C1 | 18 |
pSTMos.08 | ASSPT | E(GLWGG)R | YEQYFGPGTKLTVV | FM993920 | D2 | J2.7 | C3 | 16 |
pSTMos.09 | ASSQE | AR(LG)AR | YFGAGTRLSVL | FM993921 | D3 | J3.3 | C3 | 12 |
pSTMos.11 | ASSR | TALRP(LGE)HAL | YGELHFGPGTRLTVL | FM993922 | D2 | J2.1 | C2 | 20 |
pSTMos.12 | ASSPT | PT | YDERHFGPGTRLTVL | FM993923 | -- | J3.1 | C3 | 12 |
pSTMos.13 | ASSR | P(WGQG)D | GELHFGPGTRLTVL | FM993924 | D3 | J2.1 | C2 | 14 |
pSTMos.14 | ASS | G | SNNPLYFGGGTRLLVL | FM993925 | -- | J2.3 | C2 | 10 |
pSTMos.17 | ASSQD | M(G)ASA | AQLYFGAGSKLTVL | FM993926 | D3 | J3.2 | C3 | 14 |
pSTMos.18 | ASSQE | (GA)DH | NPLYFGGGTRLLVL | FM993927 | D3 | J2.3 | C3 | 13 |
pSTMos.19 | ASSQ | W | SNQAQHFGHGTRLAVL | FM993928 | -- | J1.5 | C1 | 11 |
pSTMos.20 | ASSPT | LR(G)IIPT | YEQYFGPGTKLTVV | FM993929 | D1 | J2.7 | C3 | 16 |
pSTMos.21 | ASS | RSR(WG)QD | SERYFGAGTRLTVT | FM993930 | D3 | J3.5 | C3 | 14 |
pSTMos.22 | ASSR | (WG)QD | SERYFGAGTRLTVT | FM993931 | D3 | J3.5 | C3 | 12 |
pSTMos.23 | ASSQ | APYG(TF) | SETQYFGPGTRLLVL | FM993932 | D2 | J3.4 | C3 | 15 |
pSTMos.25 | ASSPT | R(Q)GG | DPLYFGAGSKLTVL | FM993933 | D1 | J2.2 | C3 | 13 |
pSSAR.01 | ASSQ | SRR(D)VS | QTQYFGPGTRLLVL | FM993934 | D1 | J2.5 | C2 | 14 |
pSSAR.02 | ASSQG | HR(TA)K | NERLYFGNGTKLSVL | FM993935 | D1 | J1.4 | C1 | 15 |
pSSAR.04 | ASSQ | (AGGW)AL | SETQYFGPGTRLLVL | FM993936 | D3 | J3.4 | C3 | 15 |
pSSAR.05 | ASSK | LG(R)DILN | EQYFGPGTKLTVV | FM993937 | D1 | J2.7 | C3 | 14 |
pSSAR.07 | ASSQD | S(GTA)D | ERLYFGNGTKLSVL | FM993938 | D1 | J1.4 | C1 | 14 |
pSSAR.08 | ASS | (LG) | NERLYFGNGTKLSVL | FM993939 | D3 | J1.4 | C1 | 10 |
pSSAR.10 | ASSL | DI(R)PN | GELHFGPGTRLTVL | FM993940 | D2 | J2.1 | C3 | 13 |
pSSAR.11 | ASSP | K(RD)GY | NPLYFGGGTRLLVL | FM993941 | D1 | J2.3 | C2 | 13 |
pSSAR.16 | ASSQE | Q(Q)SRF | NNPLYFGGGTRLLVL | FM993942 | D1 | J2.3 | C1 | 15 |
pSSAR.17 | ASSQ | SRRD | SNQAQHFGHGTRLAIL | FM993943 | -- | J1.5 | C1 | 14 |
pSSAR.19 | ASSP | S(DFG)IG | NNPLYFGGGTRLLVL | FM993944 | D2 | J2.3 | C2 | 15 |
pSSAR.23 | ASS | LSTVD | SQSTQYFGAGTRLSVL | FM993945 | -- | J3.3 | C3 | 14 |
pSSAR.24 | ASSQD | RKQGG | NSPLQFGIGTRLTVT | FM993946 | -- | J1.6 | C1 | 15 |
pSSAR.25 | ASS | FFST(G)E | ETQYFGPGTRLLVL | FM993947 | D3 | J3.4 | C3 | 13 |
pSSAR.28 | ASSQ | (GQ)DRI | NPOLYFGGGTRLLVL | FM993948 | D1 | J2.3 | C2 | 14 |
pSSAR.31 | ASSP | DP(DSG)A | AQLYFGAGSKLTVL | FM993949 | D1 | J3.2 | C3 | 14 |
pSSAR.32 | ASSQD | IS(QR)A | TDPLYFGAGSKLTVL | FM993950 | D1 | J2.2 | C3 | 15 |
pSMA.09 | ASSP | (LWGG)D | NPLYFGGGTRLLVL | FM993951 | D2 | J2.3 | C2 | 13 |
pSMA.10 | ASSQD | (AG)F | NPLYFGGGTRLLVL | FM993952 | D3 | J2.3 | C2 | 12 |
pSMA.41 | ASSQ | KR(TAG) | ERHFGPGTRLTVL | FM993953 | D1 | J3.1 | C3 | 12 |
pSMA.42 | ASS | L(GQRG)G | YEQYFGPGTKLTVV | FM993954 | D1 | J2.7 | C2 | 13 |
pSMA.46 | ASSQD | I | ETQYFGPGTRLLVL | FM993955 | -- | J3.4 | C2 | 10 |
pSMA.48 | ASSQE | LT | YEQYFGPGTKLTVV | FM993956 | -- | J2.7 | C3 | 11 |
pSMA.55 | ASSR | (DL)C | NNPLYFGGGTRLLVL | FM993957 | D2 | J2.3 | C3 | 12 |
pSMA.59 | ASSS | V(S)D | GELHFGPGTRLTVL | FM993958 | D1 | J2.1 | C2 | 11 |
pSMA.60 | ASSP | AV(G)SD | NPLYFGGGTRLLVL | FM993959 | D1 | J2.3 | C3 | 13 |
pSMA.62 | ASSP | Q(TAG)E | DPLYFGAGSKLTVL | FM993960 | D1 | J2.2 | C2 | 13 |
pSMA.65 | ASSK | GR(TAG)P | SNNPLYFGGGTRLLVL | FM993961 | D1 | J2.3 | C3 | 16 |
pSMA.66 | ASSS | DR(GW)S | QTQYFGPGTRLLVL | FM993962 | D3 | J2.5 | C2 | 13 |
pSMA.67 | ASSK | TDF | YEQYFGPGTKLTVV | FM993963 | -- | J2.7 | C2 | 11 |
pSMA.68 | ASS | W(T)LNA | AQLYFGAGSKLTVL | FM993964 | D1 | J3.2 | C2 | 12 |
pSMA.70 | ASSR | E(GTG)L | YEQYFGPGTKLTVV | FM993965 | D1 | J2.7 | C3 | 13 |
pSMA.71 | ASSP | (GP)T | NTEVFFGKGTRLTVV | FM993966 | D1 | J1.1 | C1 | 12 |
pSMA.73 | ASSP | FL(DS)V | DERHFGPGTRLTVL | FM993967 | D1 | J3.1 | C3 | 13 |
pSMA.74 | ASS | R(H)QNI | TDTQYFGPGTRLSVL | FM993968 | D1 | J2.4 | C2 | 13 |
pSMA.76 | ASSP | (S) | SNNPLYFGGGTRLLVL | FM993969 | D3 | J2.3 | C2 | 11 |
pSTA.01 | ASSR | Y(SE)GD | EYHFGPGTKLTVV | FM993970 | D1 | J1.2 | C3 | 12 |
pSTA.02 | ASSQD | LV(GTA)R | YEYHFGPGTKLTVV | FM993971 | D1 | J1.2 | C3 | 15 |
pSTA.03 | ASS | FFST(G)E | ETQYFGPGTRLLVL | FM993972 | D3 | J3.4 | C3 | 13 |
pSTA.04 | ASS | DS(W)DVQS | TQYFGPGTRLLVL | FM993973 | D3 | J3.4 | C3 | 13 |
pSTA.06 | ASSQD | (R)D | YEYHFGPGTKLTVV | FM993974 | D1 | J1.2 | C3 | 11 |
pSTA.08 | ASSP | S(R)D | TEVFFGKGTRLTVV | FM993975 | D1 | J1.1 | C3 | 11 |
pSTA.09 | ASS | (LR) | ETQYFGPGTRLLVL | FM993976 | D2 | J3.4 | C3 | 9 |
pSTA.11 | ASSP | (GQR)PP | DTQYFGPGTRLSVL | FM993977 | D1 | J2.4 | C2 | 13 |
pSTA.12 | ASS | LS(GTRG)D | TQTQYFGPGTRLLVL | FM993978 | D1 | J2.5 | C2 | 15 |
pSTA.13 | ASSR | K(RG)H | SETQYFGPGTRLLVL | FM993979 | D1 | J3.4 | C3 | 13 |
pSTA.15 | ASS | IEKA | NPLYFGGGTRLLVL | FM993980 | -- | J2.3 | C2 | 11 |
pSTA.24 | ASSK | DL(AGG)VS | SETQYFGPGTRLLVL | FM993981 | D3 | J3.4 | C2 | 16 |
pSTA.25 | ASSL | ER(QR) | DERHFGPGTRLTVL | FM993982 | D1 | J3.1 | C3 | 12 |
pSTA.26 | ASSP | R(S)DK | GELHFGPGTRLTVL | FM993983 | D1 | J2.1 | C1 | 12 |
pSTA.29 | ASSP | RQ(T)GPFG | EYHFGPGTKLTVV | FM993984 | D1 | J1.2 | C1 | 14 |