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Table 1 Statistics for alternate assemblies. The last column indicates the average Ortholog Hit Ratio (a measure of assembly quality, see Annotation) of unigenes with hits to Bombyx mori.

From: Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

  Contigs (Coverage) Singletons Assembly Size BP in Singletons B. m. Hits
CAP3 Defaults (-p 90 -h 20)
E. p. 15,444 (8.39×) 27,516 24.3 Mbp 46.0% 12,763 0.352
P. z. 17,983 (8.12×) 28,884 25.1 Mbp 43.0% 16,113 0.356
CAP3 -p 85 -h 90
E. p. 11,687 (10.07×) 20,053 19.1 Mbp 42.4% 10,183 0.372
P. z. 13,332 (9.78×) 20,563 19.5 Mbp 38.9% 12,740 0.375
Celera Standard
E. p. 23,263 (8.35×) 13,444 20.6 Mbp 21.3% 11,625 0.384
P. z. 25,822 (8.05×) 21,397 22.9 Mbp 24.4% 16,755 0.398
Celera Final
E. p. 17,110 (10.05×) 10,934 16.4 Mbp 21.3% 9,393 0.402
P. z. 19,110 (9.63×) 18,847 18.5 Mbp 25.9% 12,485 0.412