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Table 1 Statistics for alternate assemblies. The last column indicates the average Ortholog Hit Ratio (a measure of assembly quality, see Annotation) of unigenes with hits to Bombyx mori.

From: Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

 

Contigs (Coverage)

Singletons

Assembly Size

BP in Singletons

B. m. Hits

CAP3 Defaults (-p 90 -h 20)

E. p.

15,444 (8.39×)

27,516

24.3 Mbp

46.0%

12,763

0.352

P. z.

17,983 (8.12×)

28,884

25.1 Mbp

43.0%

16,113

0.356

CAP3 -p 85 -h 90

E. p.

11,687 (10.07×)

20,053

19.1 Mbp

42.4%

10,183

0.372

P. z.

13,332 (9.78×)

20,563

19.5 Mbp

38.9%

12,740

0.375

Celera Standard

E. p.

23,263 (8.35×)

13,444

20.6 Mbp

21.3%

11,625

0.384

P. z.

25,822 (8.05×)

21,397

22.9 Mbp

24.4%

16,755

0.398

Celera Final

E. p.

17,110 (10.05×)

10,934

16.4 Mbp

21.3%

9,393

0.402

P. z.

19,110 (9.63×)

18,847

18.5 Mbp

25.9%

12,485

0.412