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Table 3 SNP discovery statistics. Loose criterion: non-gap consensus in the multiple alignment, minority nucleic allele found in at least two ESTs. Strict criterion: non-gap consensus in the multiple alignment, minority nucleic allele found in at least 25% of ESTs covering the position, at least 6x coverage at the position. Non-synonymous and synonymous SNPs were counted via best BLAST hits to B. mori.

From: Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

  SNPs Transversions Transitions Non-Syn Syn Contigs With SNPs
Loose SNP Criterion
E. p. 94,783 42,719 52,064 5,341 20,520 8,042 (7.52 Mbp)
P. z. 127,004 54,934 72,070 10,193 36,170 8,888 (7.97 Mbp)
Strict SNP Criterion
E. p. 36,014 15,895 20,119 1,648 8,273 6,298 (6.11 Mbp)
P. z. 62,655 26,545 36,110 4,527 18,509 7,223 (6.75 Mbp)