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Table 1 Summary of the BLASTN search of probe target sequences on Nipponbare and 93-11 genomes.

From: A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays

  Probe Probe Set
Total number 628,725 57,194
   No hit or single hit but not perfect match to Nipponbare genome 67,531  
   Multiple hits to the Nipponbare genome 130,215  
   Unique probes in the Nipponbare genomea 430,979 51,477
SFP probes for the 93-11 genome in the unique probes for the Nipponbare genomea 69,255 22,539
Sets with more than six unique probes in the Nipponbare genomea 391,818 41,525
   SFP probes to the 93-11 genome in the selected setsb 58,150 17,912
  1. a, means probe target sequence hit a single site and perfectly match with the Nipponbare genome.
  2. b, sets with more than six unique probes in the Nipponbare genome.