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Table 1 Summary of the BLASTN search of probe target sequences on Nipponbare and 93-11 genomes.

From: A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays

 

Probe

Probe Set

Total number

628,725

57,194

   No hit or single hit but not perfect match to Nipponbare genome

67,531

 

   Multiple hits to the Nipponbare genome

130,215

 

   Unique probes in the Nipponbare genomea

430,979

51,477

SFP probes for the 93-11 genome in the unique probes for the Nipponbare genomea

69,255

22,539

Sets with more than six unique probes in the Nipponbare genomea

391,818

41,525

   SFP probes to the 93-11 genome in the selected setsb

58,150

17,912

  1. a, means probe target sequence hit a single site and perfectly match with the Nipponbare genome.
  2. b, sets with more than six unique probes in the Nipponbare genome.