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Table 3 Number of SFPs detected by transcript cRNA hybridization

From: A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays

Tissue type Shoot Young panicle Intersecta Unionb
Total probe sets 12,620 12,538 11,112 15,768
(Total probes) (121,763) (120,708) (107,129) (171,482)
SFP probes 6,657 6,549 5,573 7,633
Called 4,324 4,467 3,382 5,409
TRUE 3,393 3,513 2,812 4,094
  51.0% 53.6% 50.5% 53.6%
FALSE 931 954 570 1,315
  21.5% 21.4% 16.9% 24.3%
Genomec 2,150 2,208 1,818 2,540
  1. The probe sets with intensity above log10-2.5 for both Nipponbare and 93-11 genomes were surveyed. Called indicates the number of probes detected as SFP probes at p < 10-6 by SNEP. TRUE and FALSE are same as in Table 2. a, the case applied to the both shoot and young panicle. b, the case applied to either shoot or young panicle. c, the number of SFPs detected by whole-genome hybridization in TRUE.