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Table 2 A summary of the analysis of the sRNA candidate

From: Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris

sRNA candidate Clone number Intergenic region strand Clone(s) size (nt)a Northern size (nt)b sRNA? 5' endc 3' endc sRNA size (nt)d
sRNA-C1 1 XC0350-XC0351 + 83 ~100 Yes (sRNA-Xcc 1) 410075 410162 88
sRNA-C2 214 XC0901-XC0902 - 187 ~200 Yes (sRNA-Xcc 2) 1085474 1085288 187
sRNA-C3 2 XC3244-XC3245 - 70 ~100, >1000 Yes (sRNA-Xcc 3) 3890134 3890025 110
sRNA-C4 5 XC3924-XC3925 - 36 ~100, >1000 Yes (sRNA-Xcc 4) 4632459 4632338 122
sRNA-C5 3 XC4108-XC4109 - 20 >1000 No ND ND  
sRNA-C6 28 XC4382-XC4383 - 70 >1000 No ND ND  
sRNA-C7 4 XC4385-XC4386 - 63 >1000 No ND ND  
  1. aThe size of the largest clone if more than 1 clone obtained.
  2. bSize observed on Northern blots.
  3. cEnds determined by 5'- or 3'- RACE mapping.
  4. dSize calculated according to the 5'- and 3'-ends determined by RACE mapping.
  5. ND, not done.