Table 2 Pairs (and one triplet) of possibly recently-transposed EhSINE1s.
From: Bioinformatic analysis of Entamoeba histolytica SINE1 elements
Set | SINE | Location | Length (bp) | Or. | Repeats | TSD length (bp) |
|---|---|---|---|---|---|---|
A | EhSINE1_1 | gi|169801175|gb|DS571347.1| 7763-8309 | 547 | + | 2 | 29 |
A | EhSINE1_2 | gi|169801175|gb|DS571347.1| 2150-2696 | 547 | + | 2 | 11 |
B | EhSINE1_15 | gi|169802311|gb|DS571190.1| 67757-68303 | 547 | + | 2 | 21 |
B | EhSINE1_6 | gi|169800595|gb|DS571494.1| 2811-3357 | 547 | + | 2 | 29 |
B* | EhSINE1_230 | gi|169803070|gb|DS571147.1| 112278-111732 | 547 | - | 2 | 25 |
E* | EhSINE1_206 | gi|169800562|gb|DS571508.1| 4500-3954 | 547 | - | 2 | 21 |
E | EhSINE1_18 | gi|169801330|gb|DS571317.1| 27553-28099 | 547 | + | 2 | 24 |
F* | EhSINE1_207 | gi|169801573|gb|DS571277.1| 39116-38571 | 546 | - | 2 | 24 |
F | EhSINE1_34 | gi|169799366|gb|DS572252.1| 2-548 | 547 | + | 2 | N/A# |
G | EhSINE15_42 | gi|169800336|gb|DS571597.1| 8573-9089 | 517 | + | 1 | 26 |
G* | EhSINE1_248 | gi|169800938|gb|DS571399.1| 19037-18521 | 517 | - | 1 | 16 |
J | EhSINE1_149 | gi|169801894|gb|DS571234.1| 34641-35201 | 561 | + | None | 8 |
J | EhSINE1_341 | gi|169801894|gb|DS571234.1| 29270-28710 | 561 | - | None | 0 |
O* | EhSINE1_224 | gi|169800830|gb|DS571423.1| 1030-483 | 548 | + | 2 | 13 |
O | EhSINE1_219 | gi|169798957|gb|DS572593.1| 697-150 | 548 | + | 2 | 24 |
P | EhSINE1_232 | gi|169801851|gb|DS571240.1| 35235-34688 | 548 | + | 2 | 15 |
P* | EhSINE1_236 | gi|169801851|gb|DS571240.1| 22360-21813 | 548 | + | 2 | 21 |