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Table 1 Co-localization of CpG islands and the promoter region.

From: Prediction of CpG-island function: CpG clustering vs. sliding-window methods

Method

Number of predicted islands

Genome coverage (%)

Promoter overlap (R13)

   

Number of islands

%

TJ

37,323

1.43

14,034

37.60

UCSC

27,639

0.74

13,369

48.40

CpGproD

76,886

2.81

14,814

19.30

CpGcluster:

    

   relaxed set*

198,702

1.90

30,660

15.43

   strict set**

25,454

0.65

13,349

52.40

  1. *p-value ≤ 1E-5;** p-value ≤ 1E-20