Table 5 Overlap of different CGIs with 3,465 domains bound by the polycomb repressive complex 2 (PRC2).
From: Prediction of CpG-island function: CpG clustering vs. sliding-window methods
Method | Number of predicted islands | Number of islands overlapping PRC2 domains | Number of PRC2 domains 'touched' by the prediction | SN | PPV |
|---|---|---|---|---|---|
TJ | 37,293 | 3,523 | 3,033 | 0.891 | 0.094 |
UCSC | 27,639 | 3,179 | 2,790 | 0.825 | 0.115 |
CpGproD | 76,886 | 3,321 | 3,159 | 0.916 | 0.043 |
CpGcluster: | Â | ||||
   relaxed set* | 198,702 | 9,097 | 3,097 | 0.961 | 0.046 |
   strict set** | 25,454 | 3,424 | 2,372 | 0.758 | 0.135 |