New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome

Table 1 Summary of platforms

Authors	Strains/Culture	Platform	Detection strategy	Number/Resolution
Lee et al.	BY4741/in YPD	Affymetrix	HMM	70,871/4 bp
Albert et al.	BY4741/in rich media	Pyrosequencing	Chip-Seq Length:~25 bp	~10,000/~4 bp
Whitehouse et al.	S288C/in C media	Affymetrix	Iteratively fitting	WT:58,275/~5 bp
				M:62,594/~5 bp
Shivaswamy et al.	S288C/in rich media	Solexa Ultra-high-throughput sequencing	Chip-Seq	N:49,043/~1 bp
			Length:~25 bp	H:52,817/~1 bp
Mavrich et al.	BY4741/YPD	The Roche GS20	Chip-Seq	54,753/~1 bp
		454 Life Sciences	Length > 100 bp
Field et al.	BY4741/in YPD	454 pyrosequencing	Chip-Seq	43,720~44,134/~1 bp
		parallel sequencing	Length:~200 bp

The normal condition is denoted by N, and the heat shock condition is denoted by H. The isw2 mutation strains and wild-type strains are separately represented by M and WT. Numbers in the fifth column represent the total nucleosome counts detected in each experiment and data resolution, respectively.

ISSN: 1471-2164