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Table 1 Number of overall differentially expressed genes (DEG, Benjamini-Hochberg FDR ≤ 0.05) and DEG with cut-off of 1.5- and 3.0-fold difference in mRNA abundance between mammary parenchyma and fat pad from pre-weaned Holstein calves (ca. 65 d of age).

From: Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development

  FD1 Number of DEG Network eligible Function eligible
Overall tissue effect < 1.5 9,092   
  1.5 1,478 1,098 986
Expression higher in parenchyma 1.5 736 575 517
  3.0 59   
Expression higher in fat pad 1.5 742 523 469
  3.0 75   
  1. Reported also is the number of DEG eligible for network and function/pathway analysis in Ingenuity Pathway Analysis®.
  2. 1Fold-difference between tissues (no difference = 1.0)