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Table 1 Most significant SNP associations detected by case/control analysis.

From: A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle

Marker name Chr Marker position (bp) MAF (cases) MAF (controls) Chi-square value P-value
BTB-01162852 4 115,699,819 1 0 32.00 1.54E-08
ARS-BFGL-NGS-24470 4 115,725,375 1 0.05556 28.21 1.09E-07
ARS-BFGL-NGS-43056 4 116,685,970 1 0.05556 28.21 1.09E-07
ARS-BFGL-NGS-80140 4 117,048,104 1 0.05556 28.21 1.09E-07
ARS-BFGL-NGS-108296 4 119,189,609 1 0.05556 28.21 1.09E-07
ARS-BFGL-NGS-95252 4 119,272,013 1 0.05556 28.21 1.09E-07
  1. "Chr" indicates the Bos taurus chromosome (BTA) number. "MAF" denotes the minor allele frequency, and is individually reported for case (affected) individuals and control (normal) individuals. The chi-square is the result of a basic allele test, with one degree of freedom (df). P-value is the asymptotic p-value for the basic allele test.