Table 1 Summary of the C. melo FPC physical map.
From: Generation of a BAC-based physical map of the melon genome
Number of clones fingerprinted | 23,040 | |
Number of non-empty fingerprinted clones | 18,200 | |
Number of clones with successful fingerprints | 14,484 | |
Average number of valid bands per clone | 102.1 | |
Number of singletons | 441 | |
Number of contigs | 1,355 | |
Contig size distribution | ||
100-199 | 3 | |
50-99 | 9 | |
25-49 | 102 | |
10-24 | 428 | |
3-9 | 706 | |
2 | 107 | |
Average contig length (kb) | 300 | |
Number of contigs with Q clones Contigs with ≥ 5% of Q clones | 62 0 | |
Total physical length of the contigs (Mb) | 407 | |
Longest contig | Ctg200 (3.2 Mb) | |
Number of genetic markers anchored | 169 | |
Anchored to contigs | 157 | |
Anchored to singletons | 12 | |
Number of FPC contigs and singletons linked to genetic markers | 171/18 a | |
3 markers | 2/0a | |
2 markers | 11/1a | |
1 marker | 158/17a | |
Average length (kb) | 329/101a | |
Number of markers linked to more than | ||
one FPC contig | 30 | |
Two contigs | 19 | |
Three contigs | 3 | |
Four contigs | 1 | |
1 contig + 1 singleton | 4 | |
2 contig + 1 singleton | 1 | |
2 singletons | 2 | |
Number of contigs/singletons and BACs anchored to chromosomes b | Contigs/Singletons c | BACs |
I | 20 (5.7 Mb) | 191 |
II | 18 (6.0 Mb) | 230 |
III | 13 (3.4 Mb) | 148 |
IV | 18 (4.4 Mb) | 176 |
V | 9 (2.5 Mb) | 203 |
VI | 20 (5.9 Mb) | 216 |
VII | 13 (3.8 Mb) | 142 |
VIII | 17 (4.9 Mb) | 178 |
IX | 14 (5.4 Mb) | 211 |
X | 12 (3.9 Mb) | 154 |
XI | 16 (5.6 Mb) | 228 |
XII | 6 (1.2 Mb) | 29 |
I/IX d | 1 (0.3 Mb) | 11 |
I/XI d | 1 (0.5 Mb) | 25 |
II/VIII d | 1 (0.3 Mb) | 5 |
IV/V d | 3 (0.6 Mb) | 22 |
IV/VI d | 1 (0.7 Mb) | 46 |
TOTAL | 183 (55.0 Mb) | 2,215 |