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Table 2 List of P. falciparum General Transcription Factors sorted by functions.

From: In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum

Sub-classes

Gene ID

Annotation

1. Polymerase core subunit

MAL13P1.213

RNA POLYMERASE I/II/III::Rbp-12

 

PF07_0027

RNA POLYMERASE I/II/III::Rpb-10

 

PF13_0341

RNA POLYMERASE I/II/III::Rpb-5

 

PFC0155c

RNA POLYMERASE I/II/III::Rpb-6

 

PFL0665c

RNA POLYMERASE I/II/III::Rpb-8

 

PFC0805w

RNA POLYMERASE II::Rpb-1

 

PF13_0023

RNA POLYMERASE II::Rpb-11

 

PFB0715w

RNA POLYMERASE II::Rpb-2

 

PFI1130c

RNA POLYMERASE II::Rpb-3

 

PFB0245c

RNA POLYMERASE II::Rpb-4

 

PF10_0269

RNA POLYMERASE II::Rpb-7

 

PFA0505c

RNA POLYMERASE II::Rpb-9

2. Polymerase accessories

PF08_0037

RNA polymerase II mediator complex protein MED7

 

PF14_0718

RNA polymerase II-associated factor SOH1

3. General coactivators involved in initiation

PF13_0043

CCAAT Box-binding complex::CBF-C/NF-Y-A

 

PF11_0477

CCAAT Box-binding complex::CBF-C/NF-Y-B

 

PF14_0374

CCAAT Box-binding complex::CBF-C/NF-Y-C

 

MAL7P1.78

TFIIA::TFIIA alpha

 

PFI1630c

TFIIA::TFIIA gamma

 

PFL2435w

TFIIA::TFIIA gamma

 

PFA0525w

TFIIB::TFIIB

 

PFE0415w

TFIIB::TFIIB-like

 

PFL1645w

TFIID::TAF1

 

MAL7P1.134

TFIID::TAF2

 

PFI1425w

TFIID::TAF7

 

PFE0305w

TFIID::TBP

 

PF14_0267

TFIID::TBP-like

 

PFE1110w

TFIID/SAGA::TAF10

 

MAL7P1.86

TFIIE::TFIIE alpha

 

MAL13P1.360

TFIIE::TFIIE beta

 

PFC1055w

TFIIH core p62/TFB1

 

PF14_0398

TFIIH core TFB5

 

PF13_0022

TFIIH::cyclin K

 

PFE0610c

TFIIH::MAT1

 

PF13_0279

TFIIH::p34

 

MAL13P1.76

TFIIH::p44

 

PFL2125c

TFIIH::p52

 

PF10_0369

TFIIH::XPB

 

PFI1650w

TFIIH::XPD

4. General coactivators involved in initiation and elongation

PF11_0458

TFIIF::TFIIF beta

 

MAL8P1.104

CCR4-NOT complex::CAF1

 

PFE0375w

CCR4-NOT complex::CAF40

 

PFA0350w

CCR4-NOT complex::CCR4

 

PFC0850c

CCR4-NOT complex::CCR4

 

PFE0980c

CCR4-NOT complex::CCR4

 

PF11_0049

CCR4-NOT complex::NOT1

 

PF14_0170

CCR4-NOT complex::NOT1

 

PF11_0297

CCR4-NOT complex::NOT2

 

PF10_0062

CCR4-NOT complex::NOT3/NOT5

 

PFL1705w

CCR4-NOT complex::NOT4

 

PF14_0241

General transcription factor BTF3

 

PF11_0293

Transcriptional co-activator MBF1

5. General coactivators involved elongation

PF10_0293

DSIF::SPT4

 

PFF0535c

DSIF::SPT5

 

PF14_0059

SPT6

 

PF07_0057

TFIIS