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Table 3 List of P. falciparum Chromatin-related Factors sorted by functions.

From: In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum

Sub-classes

Gene ID

Annotation

1. Histones

PFC0920w

Histone H2A

 

PFF0860c

Histone H2A

 

PF07_0054

Histone H2B

 

PF11_0062

Histone H2B

 

PF13_0185

Histone H3

 

PFF0510w

histone H3

 

PFF0865w

Histone H3

 

PF11_0061

Histone H4

2. Chromatin structuration

PF10_0328

bromodomain protein

 

PF14_0724

bromodomain protein

 

PFA0510w

bromodomain protein

 

PFL0635c

bromodomain protein

 

PF11_0418

chromodomain protein

 

PFL1005c

PfHP1 (chromodomain protein)

 

PFB0875c

Chromatin-binding protein, putative

 

PFF1185w

ISW1::ISW1 homologue

 

PF10_0232

SAGA/SILK::CHD1 homologue

 

PFB0730w

SWI/SNF::SNF2 homologue

 

PF13_0308

SWI/SNF::SNF2 like

 

PF08_0048

SWR1::SWR1

 

PFF0225w

DNA helicase

 

MAL8P1.65

FUN30 homologue

 

PF11_0053

PfSNF2L: chromatin accessibility complex::ISW2 homologue

 

PFI0590c

zf-HIT protein

 

PF14_0314

chromatin assembly factor 1 p55 subunit, putative

 

PFA0520c

chromatin assembly factor 1 protein WD40 domain, putative

3. Chromatin remodelling

PFE0090w

chromosome assembly factor 1, CAF-1

 

PF14_0393

FACT::POB3

 

PFE0870w

FACT::SPT16

 

PF08_0100

SWR1::RVB1 homologue

 

PF11_0071

SWR1::RVB1 homologue

 

PF13_0330

SWR1::RVB2 homologue

 

PF14_0608

SWR1::SWC2 homologue

 

PFF1385c

SWR1/NuA4::SWC4 homologue

 

PFI0930c

nucleosome assembly protein (PfB7)

 

PFL0185c

nucleosome assembly protein 1

 

PFL0145c

PfHMGB1

 

MAL8P1.72

PfHMGB2

 

MAL13P1.290

PfHMGB4

4. Modifying enzymes

MAL13P1.255

adenine-specific methylase

 

PF11_0192

HAT, NuA4::ESA1

 

PF08_0034

HAT, ADA/SAGA::GCN5

 

MAL8P1.200

HAT, histone acetyl transferase

 

PF10_0036

HAT, histone acetyl transferase

 

PF13_0131

HAT, histone acetyl transferase

 

PF14_0350

HAT, histone acetyl transferase

 

PFA0465c

HAT, histone acetyl transferase

 

PFF1405c

HAT, histone acetyl transferase

 

PF10_0078

HDAC, Histone deacetylase

 

PF14_0690

HDAC, Histone deacetylase

 

PFI1260c

HDAC, Histone deacetylase

 

PF13_0152

HDAC, SIR2 family

 

PF14_0489

HDAC, SIR2 family

 

MAL8P1.111

histone demethylase JHD2

 

MAL13P1.19

SAGA/NuA4::TRA1

 

MAL13P1.122

SET domain protein

 

PF08_0012

SET domain protein

 

PF11_0160

SET domain protein

 

PFD0190w

SET domain protein

 

PFF1440w

SET domain protein

 

PFL0690c

SET histone-lysine N-methyltransferase, putative

 

MAL7P1.37

SIN3-repressing complex::p18

 

MAL8P1.131

SWR1/NuA4::YAF9 homologue