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Table 1 Gene differentially regulated by dystrophin deficiency and cited in the text

From: Transcriptomic analysis of dystrophin RNAi knockdown reveals a central role for dystrophin in muscle differentiation and contractile apparatus organization

Entrez ID Gene Symbol Gene Name Fold Change Adjusted p value
66211 Rpl3l ribosomal protein l3-like -6.3 3.80E-08
13405 Dmd dystrophin, muscular dystrophy -3.7 9.54E-08
19293 Pvalb parvalbumin -6.1 9.54E-08
78785 Clip4 CAP-GLY domain containing linker protein family, member 4 -3 9.54E-08
16716 Ky kyphoscoliosis peptidase -4.1 1.48E-07
59011 Myoz1 myozenin 1 -3.6 2.46E-07
19130 Prox1 prospero-related homeobox 1 3 2.55E-05
233199 Mybpc2 myosin binding protein c, fast-type -2.3 3.81E-05
12335 Capn3 calpain 3 -2.1 3.82E-05
18682 Phkg1 phosphorylase kinase gamma 1 -3.9 3.82E-05
14403 Gabrd gamma-aminobutyric acid (gaba-a) receptor, subunit delta -4.2 8.94E-05
243912 Hspb6 heat shock protein, alpha-crystallin-related, b6 -1.9 1.77E-04
140781 Myh7 myosin, heavy polypeptide 7, cardiac muscle 2.7 2.10E-04
21393 Tcap titin-cap -1.7 2.45E-04
76469 Cmya5 cardiomyopathy associated 5 -1.8 2.74E-04
380698 Obscn obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF -2 3.19E-04
76884 Cyfip2 riken cdna 1500004i01 gene -2.1 4.12E-04
12632 Cfl2 cofilin 2, muscle -1.7 8.51E-04
100072 Camta1 calmodulin binding transcription activator 1 -1.6 8.96E-04
20266 Scn1b sodium channel, voltage-gated, type i, beta -1.7 9.09E-04
18642 Pfkm phosphofructokinase, muscle -1.5 1.10E-03
11448 Chrne cholinergic receptor, nicotinic, epsilon polypeptide -3.4 1.16E-03
74769 Pik3cb phosphatidylinositol 3-kinase, catalytic, beta polypeptide 1.5 1.25E-03
12372 Casq1 calsequestrin 1 -1.6 3.27E-03
14245 Lpin1 lipin 1 -1.5 3.79E-03
109731 Maob monoamine oxidase b -1.5 4.95E-03
12575 Cdkn1a cyclin-dependent kinase inhibitor 1a (p21) -1.5 6.65E-03
14555 Gpd1 glycerol-3-phosphate dehydrogenase 1 (soluble) -1.7 6.65E-03
19309 Pygm muscle glycogen phosphorylase -1.6 7.55E-03
26409 Map3k7 mitogen activated protein kinase kinase kinase 7 (Synonym Tak1) 1.5 1.22E-02
338372 Map3k9 mitogen-activated protein kinase kinase kinase 9 1.8 1.66E-02
11474 Actn3 actinin alpha 3 -1.6 1.75E-02
20661 Sort1 sortilin 1 1.6 1.82E-02
  1. This table details genes from Additional file 2 that were cited in the text. Table sorted by ascending adjusted p values. Italicized genes are those dysregulated in dystrophin siRNA treated samples versus untreated samples, but changing in the opposite direction in the GL2 siRNA treated versus untreated samples (see result section for details).