Database of exact tandem repeats in the Zebrafish genome

BMC Genomics

Table 5 Repeats of length 30 with each of the six possible protein translations

GP	Repeat Base	All possible protein translations						#
1	AGCCCCTGAGCGCCCTCCAGTGTCGGCTCC	APAPERPPVS	DTGGRSGAGA	RHWRALRGWS	RLQPLSALQC	GSSP*APSSV	TLEGAQGLEP	32
1	AGAGCGCCCGCCAGTGTCGGCTCCAGCCCC	APAPERPPVS	DTGGRSGAGA	RHWRALWGWS	RLQPQSARQC	GSSPRAPASV	TLAGALGLEP	12
1	ACACTGGAGGGCGCTCAGGGGCTGGAGCCG	APAPERPPVS	DTGGRSGAGA	RHWRALRGWS	RLQPLSALQC	GSSP*APSSV	TLEGAQGLEP	16
1	ACACTGGCGGGCGCTCTGGGGCTGGAGCCG	APAPERPPVS	DTGGRSGAGA	RHWRALWGWS	RLQPQSARQC	GSSPRAPASV	TLAGALGLEP	12
1	ACACTGGAGGGCGCTCTGGGGCTGGAGCCG	APAPERPPVS	DTGGRSGAGA	RHWRALWGWS	RLQPQSALQC	GSSPRAPSSV	TLEGALGLEP	15
1	AGAGCGCCCTCCAGTGTCGGCTCCAGCCCC	APAPERPPVS	DTGGRSGAGA	RHWRALWGWS	RLQPQSALQC	GSSPRAPSSV	TLEGALGLEP	14
1	ACACTGGCGGGCGCTCGGGGGCTGGAGCCG	APAPERPPVS	DTGGRSGAGA	RHWRALGGWS	RLQPPSARQC	GSSPRAPASV	TLAGARGLEP	2
2	ACTGGAGGCAGCTGGACTGGAGCCGGCGGG	APVQLPPVPP	AGGTGGSWTG	PAGLEAAGLE	RRDWRQLDWS	LQSSCLQSRR	SSPAASSPAG	2
2	ACAGGAGGCAGCTGGGCTGGAGCCGGCGGG	APAQLPPVPP	AGGTGGSWAG	PAGQEAAGLE	RRDRRQLGWS	LQPSCLLSRR	SSPAASCPAG	1
2	AGCTGCCTCCAGTCCCGCCGGCTCCTGCCC	APAQLPPVPP	AGGTGGSWAG	PAGLEAAGQE	RRDWRQLGRS	LLPSCLQSRR	SSPAGSCPAA	1
2	ACTGGAGGCAGCTGGGCAGGAGCCGGCGGG	APAQLPPVPP	AGGTGGSWAG	PAGLEAAGQE	RRDWRQLGRS	LLPSCLQSRR	SSPAGSCPAA	1
3	AAGATGGCCGACTCCAGTCCTCCAGCTCAC	QLTRWPTPVL	SSQDGRLQSS	AHKMADSSP	WRTGVGHLVS	GGLESAIL*A	EDWSRPSCEL	7
3	ACTGGAGTCGGCCATCTTGTGAGCTGGAGG	QLTRWPTPVL	SSQDGRLQSS	AHKMADSSP	WRTGVGHLVS	GGLESAIL*A	EDWSRPSCEL	1
4	AAACTGCCGCAAGGCTCCAAATACTTCTCC	KLPQGSKYFS	NCRKAPNTSP	TAARLQILLQ	LEKYLEPCGS	WRSIWSLAAV	GEVFGALRQF	1

GP: grouping; #: number of instances found in the Zv8 assembly. Note the repeat base has been reordered by lexicographical order.

ISSN: 1471-2164