Table 2 Significantly enriched GO-labels in the block and/or tandem duplicates of the Phytophthora species.
From: The hidden duplication past of the plant pathogen Phytophthora and its consequences for infection
GO-tree | GO-label | GO-description | No. of TD* | No. of BD* | Relative to the total No. of TD and BD | Relative to the total No. of genes | ||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | % TD | % BD | % TD | % BD |
Only in tandem duplicates | Â | Â | ||||||
P | GO:0006464 | protein modification process | 173 | 18 | 14.9 | 5.4 | 9.4 | 1.0 |
P | GO:0044403 | symbiosis, encompassing mutualism through parasitism | 28 | 4 | 2.4 | 1.2 | 25.0 | 3.6 |
P | GO:0006091 | generation of precursor metabolites and energy | 97 | 22 | 8.4 | 6.6 | 10.8 | 2.4 |
F | GO:0016301 | kinase activity | 163 | 15 | 10.4 | 3.7 | 10.5 | 1.0 |
F | GO:0008289 | lipid binding | 49 | 7 | 3.1 | 1.7 | 8.9 | 1.3 |
F | GO:0004672 | protein kinase activity | 155 | 15 | 9.9 | 3.7 | 12.2 | 1.2 |
C | GO:0005576 | extracellular region | 56 | 10 | 10.2 | 5.2 | 21.5 | 0.4 |
C | GO:0005764 | lysosome | 12 | 3 | 2.2 | 1.5 | 37.5 | 9.4 |
C | GO:0005773 | vacuole | 12 | 3 | 2.2 | 1.5 | 31.6 | 7.9 |
C | GO:0030312 | external encapsulating structure | 8 | 3 | 1.5 | 1.5 | 20.5 | 7.7 |
C | GO:0005618 | cell wall | 7 | 3 | 1.3 | 1.5 | 20 | 8.6 |
Only in block duplicates | Â | Â | ||||||
P | GO:0006996 | organelle organization and biogenesis | 45 | 26 | 3.9 | 7.8 | 5.8 | 3.3 |
P | GO:0007154 | cell communication | 53 | 24 | 4.6 | 7.2 | 5.9 | 2.7 |
P | GO:0007165 | signal transduction | 19 | 22 | 1.6 | 6.6 | 3.2 | 3.7 |
P | GO:0015031 | protein transport | 4 | 12 | 0.3 | 3.6 | 1.0 | 3.0 |
P | GO:0016043 | cellular component organization and biogenesis | 59 | 45 | 5.1 | 13.5 | 4.5 | 3.4 |
F | GO:0003779 | actin binding | 8 | 8 | 0.5 | 2.0 | 9.1 | 9.1 |
F | GO:0004871 | signal transducer activity | 10 | 15 | 0.6 | 3.7 | 4.0 | 5.9 |
F | GO:0004872 | receptor activity | 10 | 14 | 0.6 | 3.5 | 7.4 | 10.3 |
F | GO:0005509 | calcium ion binding | 13 | 19 | 0.8 | 4.7 | 2.1 | 3.0 |
F | GO:0008092 | cytoskeletal protein binding | 8 | 8 | 0.5 | 2.0 | 8.1 | 8.1 |
F | GO:0030528 | transcription regulator activity | 29 | 12 | 1.9 | 3.0 | 7.0 | 2.9 |
In tandem and block duplicates | Â | Â | ||||||
P | GO:0005975 | carbohydrate metabolic process | 174 | 39 | 15.0 | 11.7 | 19.2 | 4.3 |
P | GO:0006810 | transport | 326 | 120 | 28.1 | 35.9 | 10.5 | 3.9 |
P | GO:0006811 | ion transport | 53 | 29 | 4.6 | 8.7 | 9.0 | 4.9 |
P | GO:0006950 | response to stress | 53 | 20 | 4.6 | 6.0 | 12.0 | 4.5 |
P | GO:0009605 | response to external stimulus | 10 | 8 | 0.9 | 2.3 | 20.0 | 16.0 |
P | GO:0009628 | response to abiotic stimulus | 20 | 9 | 1.7 | 2.6 | 16.1 | 7.3 |
P | GO:0009607 | response to biotic stimulus | 36 | 8 | 3.1 | 2.3 | 23.1 | 5.1 |
F | GO:0003824 | catalytic activity | 1019 | 253 | 65.2 | 62.6 | 8.8 | 2.2 |
F | GO:0005215 | transporter activity | 215 | 74 | 13.8 | 18.3 | 13.0 | 4.5 |
F | GO:0016787 | hydrolase activity | 446 | 125 | 28.6 | 31.0 | 9.5 | 2.7 |