Table 1 Distribution of variable peptidases and peptide transporters in Lactococcus lactis strains by CGH analysis (genes which are either present or absent in all query and reference strains are excluded)
From: The proteolytic system of lactic acid bacteria revisited: a genomic comparison
Strains a | ssp | origin | PrtP | PrtM | Pcp | PepF1 | OppA1 | PepO2 | PepF2 | OppA2 | OppB2 | OppC2 | OppD2 | OppF2 | DppB | PepX2 (YmgC) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KF24 | lactis | plant | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
NIZOB2244W | lactis | plant | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
LMG9446 | lactis | plant | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
KF196 | lactis | plant | 0? | 0? | 0? | 1 | 1 | 0? | 0? | 0? | 0? | 0? | 0? | 0? | 1 | 0? |
KF201 | lactis | plant | 0? | 0? | 0? | 1 | 1 | 0? | 0? | 0? | 0? | 0? | 0? | 0? | 1 | 0? |
N42 | lactis | plant | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
KF134 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
E34 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Li-1 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
M20 | lactis | plant | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
K231 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
LMG9449 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
KF146 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
KF147 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
K337 | lactis | plant | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
KF67 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
KF7 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
LMG8520 | lactis | plant | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
KF282 | lactis | plant | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
LMG8526 | lactis | plant | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
UC317 | lactis | dairy | 1 | 1 | 0? | 1 | 1 | 0? | 0? | 0? | 0? | 0? | 0? | 0? | 1 | 1 |
ML8 | lactis | dairy | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
LMG14418 | lactis | dairy | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
IL1403 | lactis | dairy | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
DRA4 | lactis | dairy | 0 | 0 | 0? | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
NCDO895 | lactis | dairy | 0 | 0? | 0? | 1 | 1 | 0 | 0? | 0? | 0? | 0 | 0 | 0 | 1 | 1 |
ATCC19435T | lactis | dairy | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
KW10 | cremoris | plant | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
N41 | cremoris | plant | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
NCDO763 | cremoris | dairy | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
SK11 | cremoris | dairy | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
AM2 | cremoris | dairy | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
FG2 | cremoris | dairy | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
LMG6897T | cremoris | dairy | 1 | 1 | 0? | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
V4 | cremoris | dairy | 0? | 0? | 0? | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
HP | cremoris | dairy | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
MG1363 | cremoris | dairy | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |