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Table 1 Genes associated with the Gene Ontology (GO) biological processes shown in Figure 1B and 1C

From: Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate

GO Biological Processes Associated Genes
A) Up-regulated GO biological processes
Nervous system development (70 genes) Actr3, Acvr1, Ank3, Apc, Aplp2, Arc, Arhgef2, Arpc2, Atp2b2, Atrx, B3gnt2, Bcl11b, Brsk2, Btg2, Cacna1c, Centb2, Cttn, Diap1, Dpysl2, Egr2, Elavl3, Enah, Epha3, Epha4, Epha6, Epha7, Fos, Fut8, Gja1, Grin2a, Hipk2, Itga8, Kif5c, Klhl24, Lefty1, Mbp, Mef2a, Mib1, Ndel1, Ndst1, Nfib, Nisch, Npnt, Nrcam, Nrp1, Nrp2, Nrxn3, Ntrk2, Ntrk3, Pafah1b1, Pbx1, Pcsk2, Pex2, Prkca, Prkg1, Ptk2, Rsc1a1, Rtn4, Scn2a1, Scn8a, Sema5a, Sh3rf1, Slit3, Tacc1, Top2b, Trpm7, Wasl, Yy1, Zbtb16, Zeb2
Intracellular signal transduction (68) Aak1, Abl2, Acvr1, Add1, Add2, Akt3, Aplp2, Arhgef12, Arhgef2, Atp2b2, Brap, Brsk2, Camk2a, Camk2b, Centb2, Centg2, Csnk1a1, Diap1, Dock10, Dock9, Dyrk1a, Epha3, Epha4, Epha6, Epha7, Fert2, Frap1, Fut8, Hipk2, Hrasls, Itga8, Kalrn, Ksr1, Map2k4, Mapk14, Mapk8, Mtmr1, Mtmr3, Mtmr9, Myo9b, Ndst1, Net1, Nisch, Npnt, Nrp1, Ntrk2, Ntrk3, Pafah1b1, Pftk1, Phip, Phka2, Ppp3ca, Prkca, Prkg1, Ptk2, Ptk2b, Ptprj, Ptprs, Rabgap1, Rps6kb1, Rutbc3, Slc8a2, Slk, Srpk2, Tbc1d15, Tlk2, Trpm7, Uhmk1
Cytoskeleton & focal adhesion (38) Abl2, Actr3, Add1, Add2, Apc, Arc, Arhgef2, Arpc2, Cap2, Capn3, Centb2, Clasp1, Clip1, Coro1c, Diap1, Dmd, Dst, Enah, Enc1, Epb4.1l1, Frmd4b, Gmfb, label, Mtap7, Myo9b, Ndel1, Nisch, Pafah1b1, Polb, Ptk2, Ptk2b, Spire1, Tacc1, Tpm1, Trpm7, Wasf3, Wasl, Wdr1
Ion transport & homeostasis (23) Atp1a1, Atp2b2, Atp2c1, Atp6v0d1, Atp8a1, Atp9b, Cacna1c, Cacna1d, Cacna1h, Cacna2d1, Cacnb2, Camk2a, Camk2b, Grin2a, Grin2b, Ppp3ca, Ryr1, Scn2a1, Scn3b, Scn8a, Slc8a2, Trpc4, Trpm7
Synaptic neurotransmission (21) Arc, Atp2b2, Atxn1, Camk2a, Dlg1, Dlg2, Dlg4, Erc2, Exoc4, Exoc5, Gabbr1, Gabrb2, Gabrb3, Grin2a, Grin2b, Magi2, Nrxn3, Ppp3ca, Rps6kb1, Snca, Vps33a
mRNA processing (15) Adar, Cdc40, Cpsf6, Cugbp2, Lsm11, Prpf39, Prpf40a, Sfpq, Sfrs10, Sfrs12, Sfrs8, Srpk2, Srrm2, Syncrip, Tra2a
Protein mis-folding correction & degradation (9) Ahsa1, Ahsa2, Dnajc1, Usp12, Usp19, Usp20, Usp32, Usp47, Usp7
Cognition & behavior (8) Atxn1, Cacna1c, Epha4, Grin2a, Grin2b, Itga8, Pafah1b1, Scn8a
B) Down-regulated GO biological processes
Intracellular signal transduction (57) AW551984, Acvr2b, Adra2a, Angpt1, Anxa1, Arhgap6, Bmper, Cacnb4, Calca, Car8, Cckbr, Cd24a, Cdc42ep1, Cit, D0H4S114, Dcx, Ddit4l, Ddr2, Depdc6, Gnb4, Gng4, Gpr101, Gpr103, Gpr83, Gulp1, Hrh1, Igf1, Khdrbs1, Nr2f2, Pde1c, Pde9a, Pgr, Plcxd3, Plek, Ppard, Ptprd, Rab3b, Reln, Rfxank, Rgs17, Rgs2, Rora, Rspo2, Sh2d3c, Shd, Slc9a3r2, Sparc, Stmn1, Tacr3, Tbc1d8, Tgm2, Timp2, Trhr, Unc13c, Unc5d, Wnt4, Wnt7a
Gene transcription (33) 6430502M16Rik, Ankrd56, Arx, Btbd11, Cutl1, Cutl2, Etv6, Foxp2, Hes5, Hivep1, Hoxc6, Ikzf4, Irf6, Khdrbs1, Klf5, Lbh, Ldb2, Lhx2, Maf, Mef2c, Mrg1, Nr2f2, Pbx3, Pgr, Ppard, Prrx1, Rora, Satb1, Satb2, Ssbp2, Trim66, Tshz2, Tshz3
Nervous system development (29) Arx, Atp1a2, Calca, Car10, Cd24a, Cd44, Cit, Cobl, Cutl1, Dcx, Efna5, Foxp2, Gap43, Grin3a, Hes5, Igf1, Lhx2, Nr2f2, Nts, Pex13, Pgr, Ppard, Reln, Rora, Stmn1, Timp2, Tnnt2, Wnt4, Wnt7a
Cell adhesion & secretion (14) Amn, Anxa1, Cacnb4, Calca, Cd24a, Cplx3, Cutl1, Exoc6, Ppard, Rab3b, Rims3, Tgm2, Unc13c, Wnt7a
Synaptic neurotransmission (10) Atp1a2, Cacnb4, Cckbr, Cplx3, Gpr103, Gpr83, Rims3, Slc17a6, Tacr3, Wnt7a
Ion homeostasis (4) Atp1a2, Cacnb4, Calca, Cd24a