Table 3 Differentially expressed genes of transcription factors (TF) and over-representation (over-rep) of TF binding sequences within each gene cluster
From: Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury
| Â | DEG of TF | Â | Â | |
|---|---|---|---|---|
Clusters | Gene ID | Protein ID | TF over-rep | Motifs |
Cluster 1 | Gtf2e2 | T2EB | E2F1 | E2F1_Q3_01 |
| Â | Nfyc | NFYC | FOXO1 | E2F1_Q2_01 |
| Â | Olig1 | OLIG1 | Â | E2F1_Q6_01 |
| Â | Pbx3 | PBX3 | Â | FOXO1_01 |
| Â | Tfb2m | TFB2M | Â | FOXO1_02 |
Cluster 2 | E2f5 | E2F5 | FOXO1 | FOXO1_01 |
| Â | Morf4l1 | MO4L1 | Â | FOXO1_02 |
Cluster 3 | Aatf | AATF | FOXO1 | FOXO1_01 |
| Â | Btf3 | BTF3 | Â | FOXO1_02 |
| Â | Klf10 | KLF10 | Â | Â |
Cluster 4 | Arid1b | ARID1B | E2F1 | E2F1_Q3_01 |
| Â | Gtf2ird1 | GT2D1 | FOXO1 | FOXO1_01 |
| Â | Irf9 | IRF9 | Â | FOXO1_02 |
Cluster 5 | Atf3 | ATF3 | ATF4 | ATF4_Q2 |
| Â | Myc | MYC | Â | Â |
| Â | Tceb3 | ELOA1 | Â | Â |
| Â | Ybx1 | YBX1 | Â | Â |
Cluster 6 | Â | Â | ATF4 | ATF4_Q2 |
| Â | Â | Â | E2F1 | E2F1_Q3 |
| Â | Â | Â | MYC | MYC_Q2 |
| Â | Â | Â | SP1 | SP1_01 |
| Â | Â | Â | Â | SP1_Q2_01 |
| Â | Â | Â | Â | SP1_Q4_01 |
| Â | Â | Â | Â | SP1_Q6 |
| Â | Â | Â | Â | SP1_Q6_01 |
Cluster 7 | E2f1 | E2F1 | ATF3 | ATF3_Q6 |
| Â | Foxo1 | FOXO1 | ATF4 | ATF4_Q2 |
| Â | Gtf3c1 | TF3C1 | E2F1 | E2F1_Q3 |
| Â | Sp1 | SP1 | MYC | E2F1_Q3_01 |
| Â | Â | Â | SP1 | E2F1_Q4 |
| Â | Â | Â | Â | E2F1_Q4_01 |
| Â | Â | Â | Â | E2F1_Q6 |
| Â | Â | Â | Â | E2F1_Q6_01 |
| Â | Â | Â | Â | MYC_Q2 |
| Â | Â | Â | Â | SP1_01 |
| Â | Â | Â | Â | SP1_Q2_01 |
| Â | Â | Â | Â | SP1_Q4_01 |
| Â | Â | Â | Â | SP1_Q6 |
| Â | Â | Â | Â | SP1_Q6_01 |
Cluster 8 | Hsf4 | HSF4 | ATF3 | ATF3_Q6 |
| Â | Tbx3 | TBX3 | ATF4 | ATF4_Q2 |
| Â | Â | Â | E2F1 | E2F1_Q3 |
| Â | Â | Â | MYC | E2F1_Q3_01 |
| Â | Â | Â | SP1 | E2F1_Q6 |
| Â | Â | Â | Â | MYC_Q2 |
| Â | Â | Â | Â | SP1_01 |
| Â | Â | Â | Â | SP1_Q2_01 |
| Â | Â | Â | Â | SP1_Q4_01 |
| Â | Â | Â | Â | SP1_Q6 |
| Â | Â | Â | Â | SP1_Q6_01 |
Cluster 9 | Arid1b | ARID1B | ATF3 | ATF3_Q6 |
| Â | Nr2f2 | COT2 | E2F1 | E2F1_Q3 |
| Â | Pou2f3 | PO2F3 | SP1 | E2F1_Q6 |
| Â | Runx3 | RUNX3 | Â | SP1_01 |
| Â | Â | Â | Â | SP1_Q2_01 |
| Â | Â | Â | Â | SP1_Q4_01 |
| Â | Â | Â | Â | SP1_Q6 |
| Â | Â | Â | Â | SP1_Q6_01 |
Cluster 10 | Atf4 | ATF4 | ATF4 | ATF4_Q2 |
| Â | Srebf1 | SRBP1 | E2F1 | E2F1_Q3 |
| Â | Â | Â | MYC | E2F1_Q3_01 |
| Â | Â | Â | SP1 | E2F1_Q4 |
| Â | Â | Â | Â | E2F1_Q4_01 |
| Â | Â | Â | Â | E2F1_Q6 |
| Â | Â | Â | Â | E2F1_Q6_01 |
| Â | Â | Â | Â | MYC_Q2 |
| Â | Â | Â | Â | SP1_01 |
| Â | Â | Â | Â | SP1_Q2_01 |
| Â | Â | Â | Â | SP1_Q4_01 |
| Â | Â | Â | Â | SP1_Q6 |
| Â | Â | Â | Â | SP1_Q6_01 |
Cluster 11 | Dmrt1 | DMRT1 | AFT3 | ATF3_Q6 |
| Â | Gtf2h4 | GTF2H4 | E2F1 | E2F1_Q3 |
| Â | Zeb1 | ZEB1 | MYC | MYC_Q2 |
| Â | Â | Â | SP1 | SP1_01 |
| Â | Â | Â | Â | SP1_Q2_01 |
| Â | Â | Â | Â | SP1_Q4_01 |
| Â | Â | Â | Â | SP1_Q6 |
| Â | Â | Â | Â | SP1_Q6_01 |
Cluster 12 | Nfia | NFIA | AFT3 | ATF3_Q6 |
| Â | Nkx6-2 | NKX6-2 | E2F1 | E2F1_Q3_01 |
| Â | Â | Â | FOXO1 | E2F1_Q4_01 |
| Â | Â | Â | Â | E2F1_Q6 |
| Â | Â | Â | Â | E2F1_Q6_01 |
| Â | Â | Â | Â | FOXO1_01 |