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Table 1 Overview of differential gene expression in Hr6b knockout spermatids versus wild type per chromosome.

From: The ubiquitin-conjugating enzyme HR6B is required for maintenance of X chromosome silencing in mouse spermatocytes and spermatids

Chrom Chrom length # genes gene density # differentially expressed % differentially expressed up in ko down in ko fraction up in ko
1 197195432 1272 155028 412 32.4 134 278 0.33
2 181748087 1942 93588 555 28.6 187 368 0.34
3 159599783 1071 149019 306 28.6 98 208 0.32
4 155630120 1410 110376 402 28.5 151 251 0.38
5 152537259 1339 113919 424 31.7 140 284 0.33
6 149517037 1149 130128 363 31.6 120 243 0.33
7 152524553 2026 75284 426 21.0 207 219 0.49
8 131738871 1121 117519 318 28.4 102 216 0.32
9 124076172 1289 96258 372 28.9 129 243 0.35
10 129993255 1042 124754 319 30.6 117 202 0.37
11 121843856 1748 69704 490 28.0 182 308 0.37
12 121257530 733 165426 270 36.8 63 207 0.23
13 120284312 882 136377 253 28.7 85 168 0.34
14 125194864 879 142429 251 28.6 79 172 0.31
15 103494974 835 123946 289 34.6 115 174 0.40
16 98319150 706 139262 244 34.6 78 166 0.32
17 95272651 1096 86928 285 26.0 125 160 0.44
18 90772031 528 171917 173 32.8 37 136 0.21
19 61342430 758 80927 239 31.5 89 150 0.37
x 166650296 965 172695 160 16.6 144 16 0.90
y 15902555 12 1325213 0 0    
     Total A Average A Total A Total A Average A
     6391 30.1 2238 4153 0.35
  1. *The first column shows the chromosome (chrom) number, followed by the length in bp, the number (#) of genes, the gene density, the number of differentially expressed genes, the percentage of differentially expressed genes, the number of upregulated genes in Hr6b knockout spermatids compared to wild type (up in ko), the number of downregulated genes in Hr6b knockout compared to wild type (down in ko), and the fraction of upregulated genes (fraction up in ko). The bottom row shows the total or average values for the columns as indicated for the autosomes only (A).