Table 2 Summary of the raw data assembly of 6 runs on 454 using newbler assembler.
Category | Quantity | Percent |
|---|---|---|
Total number of reads | 2,671,519 | - |
Total number of bases | 633,429,850 | - |
Number of searches | 2,081,652 | - |
Seed hits found | 218,338,521 | - |
Overlaps found | 6,694,880 | 3.07 |
Overlaps reported | 4,244,624 | 1.94 |
Overlaps used | 2,699,511 | 63.6 |
Number assembled | 487,166 | - |
Number partial | 1,135,496 | - |
Number singleton | 829,693 | - |
Number repeat | 185,527 | - |
Number outlier | 33,637 | - |
Large Contig Metrics | ||
Number of contigs | 15,221 | - |
Number of bases | 9,801,045 | Â |
Average contig size | 643 | - |
N50 contig size | 624 | - |
Largest contig size | 1,797 | - |
Q40 plus bases | 6,689,319 | 68.25 |
Q39 minus bases | 3,111,726 | 31.75 |
All Contig Metrics | ||
Number of contigs | 456,985 | - |
Number of bases | 110,333,787 | - |