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Table 2 GO term analysis result for cell cycle data

From: Detecting separate time scales in genetic expression data

+0 min

+8 min

+16 min

ribosome biogenesis

1.9 e−32

M phase of mitotic cell cycle

4.3 e−18

proteolysis involved in cellular pro- tein catabolic process

6.9 e−04

ribonucleoprotein complex biogene- sis and assembly

6.5 e−28

mitosis

6.8 e−17

ubiquitin-dependent protein catabolic process

9.7 e−04

ncRNA processing

3.7 e−25

mitotic cell cycle

1.1 e−16

modification-dependent protein catabolic process

9.7 e−04

rRNA processing

1.7 e−20

cell cycle

5.7 e−16

  

rRNA metabolic process

2.2 e−19

cell cycle phase

1.1 e−15

  

ncRNA metabolic process

2.5 e−17

M phase

2.5 e−14

  

maturation of 5.8S rRNA

1.6 e−14

cell cycle process

7.4 e−14

  

maturation of 5.8S rRNA from tri- cistronic rRNA transcript

1.6 e−14

cell division

4.0 e−13

  

RNA processing

1.3 e−13

DNA replication

2.6 e−09

  

ribosomal large subunit biogenesis

6.3 e−13

chromosome segregation

1.5 e−07

  

organelle organization

7.1 e−11

sister chromatid segregation

1.5 e−07

  

maturation of SSU-rRNA from tri- cistronic rRNA transcript

7.2 e−10

response to DNA damage stimulus

1.6 e−07

  

maturation of SSU-rRNA

7.2 e−10

mitotic sister chromatid segregation

1.7 e−07

  

endonucleolytic cleavage in ITS1 to separate SSU-rRNA ...

3.9 e−09

glycoprotein metabolic process

2.5 e−07

  

cleavages during rRNA processing

5.9 e−09

carbohydrate metabolic process

4.5 e−07

  

endonucleolytic cleavages during rRNA processing

8.8 e−09

protein amino acid glycosylation

1.5 e−06

  

endonucleolytic cleavage of tri- cistronic rRNA transcript ...

8.8 e−09

biopolymer glycosylation

1.5 e−06

  

RNA metabolic process

1.0 e−07

glycosylation

1.5 e−06

  

maturation of LSU-rRNA from tri- cistronic rRNA transcript ...

6.6 e−07

glycoprotein biosynthetic process

2.6 e−06

  

maturation of LSU-rRNA

6.6 e−07

cellular response to DNA damage stimulus

5.9 e−06

  

rRNA 5'-end processing

1.5 e−06

DNA repair

1.3 e−05

  

ncRNA 5'-end processing

1.5 e−06

microtubule-based process

2.4 e−05

  

RNA 5'-end processing

3.3 e−06

DNA metabolic process

2.8 e−05

  

cellular component organization

5.8 e−06

DNA-dependent DNA replication

5.9 e−05

  

endonucleolytic cleavage to gener- ate mature 5'-end ...

6.9 e−06

response to stimulus

1.1 e−04

  

ribosomal large subunit assembly and maintenance

1.0 e−05

response to stress

3.2 e−04

  

ribosome assembly

5.1 e−05

DNA packaging

4.0 e−04

  

endonucleolytic cleavage in 5'-ETS of tricistronic ...

6.2 e−05

microtubule cytoskeleton organiza- tion

5.3 e−04

  

ribosomal subunit assembly

6.6 e−05

    

nucleobase, nucleoside, nucleotide and nucleic acid ...

1.8 e−04

    
  1. Every set of genes, defined by the position of their maximally significant shift, was analyzed for over-represented GO terms (Boyle et al. 2004). Each shift (column) and term (row) found to be significant are shown.