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Table 2 GO term analysis result for cell cycle data

From: Detecting separate time scales in genetic expression data

+0 min +8 min +16 min
ribosome biogenesis 1.9 e−32 M phase of mitotic cell cycle 4.3 e−18 proteolysis involved in cellular pro- tein catabolic process 6.9 e−04
ribonucleoprotein complex biogene- sis and assembly 6.5 e−28 mitosis 6.8 e−17 ubiquitin-dependent protein catabolic process 9.7 e−04
ncRNA processing 3.7 e−25 mitotic cell cycle 1.1 e−16 modification-dependent protein catabolic process 9.7 e−04
rRNA processing 1.7 e−20 cell cycle 5.7 e−16   
rRNA metabolic process 2.2 e−19 cell cycle phase 1.1 e−15   
ncRNA metabolic process 2.5 e−17 M phase 2.5 e−14   
maturation of 5.8S rRNA 1.6 e−14 cell cycle process 7.4 e−14   
maturation of 5.8S rRNA from tri- cistronic rRNA transcript 1.6 e−14 cell division 4.0 e−13   
RNA processing 1.3 e−13 DNA replication 2.6 e−09   
ribosomal large subunit biogenesis 6.3 e−13 chromosome segregation 1.5 e−07   
organelle organization 7.1 e−11 sister chromatid segregation 1.5 e−07   
maturation of SSU-rRNA from tri- cistronic rRNA transcript 7.2 e−10 response to DNA damage stimulus 1.6 e−07   
maturation of SSU-rRNA 7.2 e−10 mitotic sister chromatid segregation 1.7 e−07   
endonucleolytic cleavage in ITS1 to separate SSU-rRNA ... 3.9 e−09 glycoprotein metabolic process 2.5 e−07   
cleavages during rRNA processing 5.9 e−09 carbohydrate metabolic process 4.5 e−07   
endonucleolytic cleavages during rRNA processing 8.8 e−09 protein amino acid glycosylation 1.5 e−06   
endonucleolytic cleavage of tri- cistronic rRNA transcript ... 8.8 e−09 biopolymer glycosylation 1.5 e−06   
RNA metabolic process 1.0 e−07 glycosylation 1.5 e−06   
maturation of LSU-rRNA from tri- cistronic rRNA transcript ... 6.6 e−07 glycoprotein biosynthetic process 2.6 e−06   
maturation of LSU-rRNA 6.6 e−07 cellular response to DNA damage stimulus 5.9 e−06   
rRNA 5'-end processing 1.5 e−06 DNA repair 1.3 e−05   
ncRNA 5'-end processing 1.5 e−06 microtubule-based process 2.4 e−05   
RNA 5'-end processing 3.3 e−06 DNA metabolic process 2.8 e−05   
cellular component organization 5.8 e−06 DNA-dependent DNA replication 5.9 e−05   
endonucleolytic cleavage to gener- ate mature 5'-end ... 6.9 e−06 response to stimulus 1.1 e−04   
ribosomal large subunit assembly and maintenance 1.0 e−05 response to stress 3.2 e−04   
ribosome assembly 5.1 e−05 DNA packaging 4.0 e−04   
endonucleolytic cleavage in 5'-ETS of tricistronic ... 6.2 e−05 microtubule cytoskeleton organiza- tion 5.3 e−04   
ribosomal subunit assembly 6.6 e−05     
nucleobase, nucleoside, nucleotide and nucleic acid ... 1.8 e−04     
  1. Every set of genes, defined by the position of their maximally significant shift, was analyzed for over-represented GO terms (Boyle et al. 2004). Each shift (column) and term (row) found to be significant are shown.