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Table 2 Summary of the predicted genes in each BAC clone.

From: Genome size evolution in pufferfish: an insight from BAC clone-based Diodon holocanthus genome sequencing

BAC ID Scaffold ID GenBank Acc. No. Gene Name
ctfa Scaffold000001 GU002104 ring finger protein 17;centromere protein J; similar to transcription termination factor, RNA polymerase II
  Scaffold000002 GU002105 hypothetical protein LOC334519; unnamed protein product
  Scaffold000003 GU002106 similar to ReO_6; similar to ring finger protein 17
ctfb Scaffold000001 GU002107 similar to GF20795; similar to KH domain-containing, RNA-binding, signal transduction-associated protein 2; EGF-like domain-containing protein; novel protein similar to vertebrate PHDfinger protein 3 (PHF3)
  Scaffold000002 GU002108  
  Scaffold000003 GU002109 similar to KH domain-containing, RNA-binding, signal transduction-associated protein 2
  Scaffold000004 GU002110 similar to DNA primase large subunit(58 kDa)
  Scaffold000005 GU002111  
ctfc Scaffold000001 GU002112 novel predicted protein; similar to neuron navigator 1; similar to cysteine and glycine-rich protein 2
  Scaffold000002 GU002113 similar to cardiac troponin T; similar to plakophilin 1
  Scaffold000003 GU002114 similar to TEA domain family member 3
  Scaffold000004 GU002115 similar to troponin I, slow skeletal muscle
ctfd Scaffold000001 GU002116 similar to neurocan; novel predicted protein
  Scaffold000002 GU002117 unnamed protein product; novel predicted protein; similar to hypothetical LOC100002099; similar to deoxyhypusine hydroxylase/monooxygenase; transmembrane 6 superfamily member 1-like
  Scaffold000003 GU002118 similar to phosphodiesterase 4D-interacting protein; unnamed protein product
  Scaffold000004 GU002119  
  Scaffold000005 GU002120 unnamed protein product
ctfe Scaffold000001 GU002121 glutathione S-transferase theta; novel predicted protein
  Scaffold000002 GU002122 novel predicted protein; d-dopachrome decarboxylase; similar to coiled-coil-helix-coiled-coil-helix domain containing 10; zinc finger 214-contain protein
  Scaffold000003 GU002123  
ctff Scaffold000001 GU002124 similar to human adrenergic receptor kinase 2; similar to human adrenergic receptor kinase 2
  Scaffold000002 GU002125 similar to beta-adrenergic kinase 2; novel predicted protein
  Scaffold000003 GU002126 similar to myosin-like protein
  Scaffold000004 GU002127 similar to beta-adrenergic receptor kinase 2
  Scaffold000005 GU002128 similar to beta-adrenergic receptor kinase 2
  Scaffold000006 GU002129  
  Scaffold000007 GU002130  
  Scaffold000008 GU002131 claudin 5b
  Scaffold000009 GU002132 novel predicted protein
ctfg Scaffold000001 GU002133 novel predicted protein; similar to tetraspanin 18; novel predicted protein
  Scaffold000002 GU002134 similar to erythrocyte membrane protein 3; novel predicted protein
  Scaffold000003 GU002135 aristaless-like homeobox 4
ctfh Scaffold000001 GU002136 novel predicted protein; similar to myocyte enhancer factor 2a; novel predicted protein; similar to multiple C2 and transmembrane domain-containing protein 2
  Scaffold000002 GU002137 novel predicted protein; novel predicted protein; novel predicted protein
  Scaffold000003 GU002138  
ctfj Scaffold000001 GU002139 novel predicted protein; novel predicted protein; similar to sterile alpha motif domain containing 3; similar to zinc finger protein
  Scaffold000002 GU002140 novel predicted protein; novel predicted protein
  Scaffold000003 GU002141 unnamed protein product
  Scaffold000004 GU002142 Dexamethasone-induced Ras-related protein 1 precursor
  Scaffold000005 GU002143  
  Scaffold000006 GU002144  
ctfk Scaffold000001 GU002145 similar to calcium-transporting ATPase 2C1 isoform 1a; similar to aldehyde dehydrogenase 5 family, member A1; similar to KIAA0319; Similar to DENN/MADD domain-containing 4B
  Scaffold000002 GU002146 novel predicted protein; similar to calcium-transporting ATPase 2C1
  Scaffold000003 GU002147 novel predicted protein
  Scaffold000004 GU002148  
  Scaffold000005 GU002149  
  Scaffold000006 GU002150  
  Scaffold000007 GU002151 novel predicted protein
  Scaffold000008 GU002152  
  1. Novel predicted proteins represent predicted genes that had no significant hits when searched against the non-redundant GenBank protein database using BLASTP. Genes used for the comparisons of intron size variation are underlined.
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