Comprehensive survey of human brain microRNA by deep sequencing

Shao, Ning-Yi; Hu, Hai Yang; Yan, Zheng; Xu, Ying; Hu, Hao; Menzel, Corinna; Li, Na; Chen, Wei; Khaitovich, Philipp

doi:10.1186/1471-2164-11-409

BMC Genomics

Table 2 Expression levels and the origins of the top 20 highly expressed putative novel miRNA identified in the human and rhesus macaque brain transcriptomes

From: Comprehensive survey of human brain microRNA by deep sequencing

Human
Mature sequences	Mapped reads	Mapped region annotation	Novel miRNA-star
AUCAUACAAGGACAAUUUCUUU	56157		hsa-mir-539*
AAUCAUUCACGGACAACACUUU	26634		hsa-mir-382*
ACCUUGGCUCUAGACUGCUUACU	13153		hsa-mir-212*
UGGGCUGUAGUGCGCUAUGCCGAU	8775	MER11B
GCGUUGGUGGUAUAGUGG	5183	tRNA-Gly-GGA
CAGGCAGUGACUGUUCAGACGUC	3586
GUCUCUGUGGCGCAAUCGGU	3467
UGUAGGGAUGGAAGCCAUGAAA	3170		hsa-mir-135a*
UGGGCUGUAGUGCGCUAUGCC	1437	7SLRNA
AGUUGGUCCGAGUGUUGUGGGUUAUU	1413	HY5	hsa-mir-1975*
AAUCUGAGAAGGCGCACAAGGUUU	958	LTR16D
AGAGGUUUUCUGGGUUUCUGUUU	832		hsa-mir-329*
AAUGUGUAGCAAAAGACAGA	746		hsa-mir-511*
AUCCCCAGAUACAAUGGACAAU	719
GGAGGAACCUUGGAGCUUCGGCA	695
GCUCUGACUUUAUUGCACUACU	686		hsa-mir-301a*
AUAUACAGGGGGAGACUCUUAU	636		hsa-mir-1185*
UGGUCGACCAGUUGGAAAGUAAU	601		hsa-mir-412*
AGGCAUUAGAUUCUCAUUAGGA	562	MER1A, MER1B
AUAGGACUCAUAUAGUGCCA	531
Rhesus macaque*
Mature sequences	Mapped reads	Mapped region annotation	Novel miRNA-star
CCCCCCACUGCUAAAUUUGACUGGCUU	243332	HY4
AAUCAUUCACGGACAACACUUU	33573		hsa-mir-382*
GAGAGAUCAGAGGCGCAGAGU	18711
AUCAUACAAGGACAAUUUCUUU	16465		hsa-mir-539*
AAGUUUCUCUGAAUGUGUAGA	12107	U3
CUGUGGUUCCUGUAUGAAGACA	11261
UGUAGGGAUGGAAGCCAUGA	5546		hsa-mir-135a*
ACUGGACUUGGAGUCAGAAG	5503	MIRb
GCAUUGGUGGUUCAGUGGUAGAAUUC	4916	AluMacYa3
GGGGGCCGAUACACUGUACGAGA	3972		hsa-mir-128*
GUAAUGGUUAGCACUCUGG	2008	AluSx, Zaphod
AAUAUACAGGGGGAGACUCUUAU	1912		hsa-mir-1185*
UGGUCGACCAGUUGGAAAGUAAU	1526		hsa-mir-412*
GCUCUGACUUUAUUGCACUACU	1476		hsa-mir-301a*
UGAGUCUGUAAGAAAAGAGGAG	1472
AAUGUGUAGCAAAAGACAGAAU	1073		hsa-mir-511*
AGGGACUUUUGGGGGCAGAUGUGU	1068		hsa-mir-365*
GGAGACUGAUGAGUUCCCGGGA	922		hsa-mir-873*
CAACAAAUCACAGCCGGCCUCA	919		hsa-mir-7*
AAUCUGAGAAGGCGCACAAGGUUU	852	LTR16D

* miRNA annotation of rhesus macaque used for labelling of the identified novel miRNA-star sequences is based on human annotation by mapping of macaque miRNA precursors to the human genome by the reciprocal LiftOver.

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ISSN: 1471-2164

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