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Table 2 Target detection for previously reported σ32-sitesa

From: ChIP on Chip: surprising results are often artifacts

Genomic positionb Targetc ChIP signald
12153 dnaK 2.9
63524 hepA 1.1
231081 yafD 1.2
415363 sbcD 1.3
455839 clpP 2.0
458088 lon 2.5
494367 htpG 2.8
517509 ybbN 2.2
661879 ybeD 2.4
692735 ybeZ 2.5
921161 macB 2.1
1027921 yccV(hspQ) 2.0
1120264 yceP(dinI) 2.1
1173268 mfd -
1189625 phoP -
1329105 topA 2.4
1338173 yciS 2.1
1382156 ycjX 2.9
1441543 ldhA -
1744259 ydhQ 1.4
1860640 gapA 2.1
1910677 htpX 1.6
2732265 clpB 2.2
2748779 grpE 2.3
2925909 sdaC 1.1
3210766 rpoD 1.7
3325757 ftsJ 2.2
3437596 yhdN 1.3
3472778 rpsL (yheL) 2.3
3527175 yrfG 2.7
3643241 prlC 2.4
3865515 ibpA 2.4
3878830 recF -
4120359 hslV 2.5
4366663 fxsA 2.4
4368634 groE(groS) 2.2
4397495 miaA 2.1
4429090 cycA 0.6
  1. a Targets listed were found in a previous ChIP-Chip study [10] and in studies using alternative methods [11, 19].
  2. bChromosomal position as middle of two microarray probes. For targets not detected in this study the genomic position described by Wade et al., 2006 are given.
  3. cNames of target genes with synonyms in brackets. Targets detected in this study are in bold.
  4. d Mean σ32 log2 ratio (IP/IN) of two probes for detected targets at the indicated genomic position (see experimental procedures for details).