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Table 3 Target detection for σ32-sites found only by Wade et al., 2006a

From: ChIP on Chip: surprising results are often artifacts

Genomic positionb Targetc ChIP signald
22199 ileS -
239254 yafU 1.6
516521 ybbM -
705196 glnS -
918375 ybjX -
1063460 yccE -
1213931 ycgF -
1247539 dhaM -
1293531 tdk/ychG -
1579583 ydeN -
1581861 ydeO -
1584068 ydeP -
1609353 yneF -
1624219 dcp -
1710454 ydgR -
1789863 ydiV -
1894985 sdaA 0.7
2166182 b2084(yegR) -
2209265 yehR -
2217821 yehZ -
2236301 mglA -
2288414 narP -
2319337 atoS -
2385514 yfbM/yfbn 1.0
2520600 xapR -
2533473 crr -
2735126 yfiO -
2762841 yfjL -
2764390 yfjN(rnlA) -
2769847 yfjU 0.9
2771222 b2641 -
2780322 ypjA 1.3
2798757 nrdH -
2879078 ygcI -
2923838 yqcD(queF) -
3117399 yghJ -
3427148 yrdA -
3543459 yhgH(gntX) -
3725552 yiaA -
3764283 yibA -
3766465 yibG -
4124864 rpmE -
4359431 cadC -
4435901 ytfI -
4465355 treR -
4482322 holC -
4524170 yjhI 1.2
4539344 fimB 0.8
4570170 yjiT -
  1. a Targets listed were found only in a previous ChIP-Chip study [10]
  2. b Chromosomal position as middle of two microarray probes. For targets not detected in this study the genomic position described by Wade et al., 2006 are given.
  3. c Names of target genes with synonyms in brackets. Targets detected in this study are in bold.
  4. d Mean σ32 log2 ratio (IP/IN) of two probes for detected targets at the indicated genomic position (see experimental procedures for details).