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Table 3 Target detection for σ32-sites found only by Wade et al., 2006a

From: ChIP on Chip: surprising results are often artifacts

Genomic positionb

Targetc

ChIP signald

22199

ileS

-

239254

yafU

1.6

516521

ybbM

-

705196

glnS

-

918375

ybjX

-

1063460

yccE

-

1213931

ycgF

-

1247539

dhaM

-

1293531

tdk/ychG

-

1579583

ydeN

-

1581861

ydeO

-

1584068

ydeP

-

1609353

yneF

-

1624219

dcp

-

1710454

ydgR

-

1789863

ydiV

-

1894985

sdaA

0.7

2166182

b2084(yegR)

-

2209265

yehR

-

2217821

yehZ

-

2236301

mglA

-

2288414

narP

-

2319337

atoS

-

2385514

yfbM/yfbn

1.0

2520600

xapR

-

2533473

crr

-

2735126

yfiO

-

2762841

yfjL

-

2764390

yfjN(rnlA)

-

2769847

yfjU

0.9

2771222

b2641

-

2780322

ypjA

1.3

2798757

nrdH

-

2879078

ygcI

-

2923838

yqcD(queF)

-

3117399

yghJ

-

3427148

yrdA

-

3543459

yhgH(gntX)

-

3725552

yiaA

-

3764283

yibA

-

3766465

yibG

-

4124864

rpmE

-

4359431

cadC

-

4435901

ytfI

-

4465355

treR

-

4482322

holC

-

4524170

yjhI

1.2

4539344

fimB

0.8

4570170

yjiT

-

  1. a Targets listed were found only in a previous ChIP-Chip study [10]
  2. b Chromosomal position as middle of two microarray probes. For targets not detected in this study the genomic position described by Wade et al., 2006 are given.
  3. c Names of target genes with synonyms in brackets. Targets detected in this study are in bold.
  4. d Mean σ32 log2 ratio (IP/IN) of two probes for detected targets at the indicated genomic position (see experimental procedures for details).