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Figure 3 | BMC Genomics

Figure 3

From: A new analysis tool for individual-level allele frequency for genomic studies

Figure 3

Chromosomal aberration plots of a T-ALL patient based on the Affymetrix Human Mapping 100K Set. A chromosomal aberration plot consists of an extended allele frequency plot, an allelic imbalance (AI) plot, and a loss-of-heterozygosity (LOH) plot from the top to the bottom (Appendix B). In the extended allele frequency plot, clusters of AI SNPs (red points) were found on chromosomal regions of 2p, 6q and 9p. The regions of 2p, 6q and 9p were also identified in the AI plot (red bar in the top panel). The regions of 6q and 9p were also identified in the LOH plot (red bar in the top panel).

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