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Table 3 GO Biological processes significantly altered following infection

From: Starvation alters the liver transcriptome of the innate immune response in Atlantic salmon (Salmo salar)

GO Identifier1

Term2

q3

m4

p5

Immune related

GO:0006952

defense response

30

110

0.00

GO:0009611

response to wounding

27

102

0.01

GO:0006954

inflammatory response

25

70

0.00

GO:0002526

acute inflammatory response

19

39

0.00

Protein metabolism

GO:0006519

cellular amino acid and derivative metabolic process

64

296

0.00

GO:0009308

amine metabolic process

55

284

0.09

GO:0044106

cellular amine metabolic process

53

256

0.02

GO:0006520

cellular amino acid metabolic process

51

253

0.05

Energy metabolism

GO:0019752

carboxylic acid metabolic process

80

372

0.00

GO:0005975

carbohydrate metabolic process

52

244

0.01

GO:0044262

cellular carbohydrate metabolic process

42

193

0.03

GO:0019318

hexose metabolic process

33

138

0.02

Catabolic process

GO:0044282

small molecule catabolic process

43

173

0.00

GO:0046164

alcohol catabolic process

23

96

0.09

GO:0046395

carboxylic acid catabolic process

21

82

0.05

GO:0009063

cellular amino acid catabolic process

19

70

0.04

Lipid and steroid metabolism

GO:0006720

isoprenoid metabolic process

12

33

0.01

GO:0045444

fat cell differentiation

3

5

0.08

GO:0006775

fat-soluble vitamin metabolic process

4

7

0.04

Other Processes

GO:0044281

small molecule metabolic process

137

683

0.00

GO:0043436

oxoacid metabolic process

80

372

0.00

GO:0040011

locomotion

20

53

0.00

GO:0030003

cellular cation homeostasis

15

50

0.04

  1. Gene ontology (GO) identifiers significantly over represented in genes differentially expressed following infection. In total 698 regulated (414 up regulated and 284 down regulated) genes were included in the list for GO analysis. 1Gene ontology identifier, 2Gene Ontology term, 3number of times the GO term is present in the gene list, 4number of times the GO term is present on the filtered array list, 5statistical enrichment for GO term. Only GO terms that appear 3 or more times are shown. Full list is shown in Additional file Table S2.