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Table 5 GO Biological processes significantly altered in infected fish depending on prior feeding regime

From: Starvation alters the liver transcriptome of the innate immune response in Atlantic salmon (Salmo salar)

GO Identifier1

Term2

q3

m4

p5

Immune related

    

GO:0002376

immune system process

9

135

0.08

GO:0009605

response to external stimulus

9

137

0.08

GO:0006952

defense response

8

110

0.08

GO:0006954

inflammatory response

7

70

0.03

GO:0002253

activation of immune response

4

25

0.03

GO:0006956

complement activation

4

22

0.02

GO:0002526

acute inflammatory response

6

39

0.01

GO:0048583

regulation of response to stimulus

5

52

0.08

GO:0002541

activation of plasma proteins involved in acute inflammatory response

4

22

0.02

GO:0006959

humoral immune response

4

28

0.04

GO:0002684

positive regulation of immune system process

4

30

0.04

GO:0048584

positive regulation of response to stimulus

4

29

0.04

GO:0050776

regulation of immune response

4

35

0.08

GO:0050778

positive regulation of immune response

4

26

0.04

Protein metabolism

GO:0016485

protein processing

4

31

0.05

GO:0051604

protein maturation

4

32

0.06

GO:0051605

protein processing by peptide bond cleavage

4

29

0.04

GO:0032880

regulation of protein localization

3

12

0.02

GO:0051222

positive regulation of protein transport

3

12

0.02

GO:0070201

regulation of establishment of protein localization

3

12

0.02

GO:0051223

regulation of protein transport

3

12

0.02

GO:0060341

regulation of cellular localization

3

20

0.07

GO:0045786

negative regulation of cell cycle

3

22

0.08

Lipid and glycerol metabolism

GO:0045834

positive regulation of lipid metabolic process

3

20

0.07

GO:0006638

neutral lipid metabolic process

3

8

0.00

GO:0006639

acylglycerol metabolic process

3

8

0.00

GO:0006641

triglyceride metabolic process

3

7

0.00

GO:0006662

glycerol ether metabolic process

3

8

0.00

GO:0018904

organic ether metabolic process

3

8

0.00

Cellular homeostasis

GO:0048518

positive regulation of biological process

13

242

0.10

GO:0032879

regulation of localization

7

53

0.01

GO:0051239

regulation of multicellular organismal process

6

63

0.05

GO:0050793

regulation of developmental process

6

41

0.01

GO:0022603

regulation of anatomical structure morphogenesis

6

27

0.00

GO:0051094

positive regulation of developmental process

5

19

0.00

GO:0045766

positive regulation of angiogenesis

5

14

0.00

GO:0045765

regulation of angiogenesis

5

19

0.00

GO:0051049

regulation of transport

4

33

0.07

GO:0051272

positive regulation of cellular component movement

3

11

0.01

GO:0051050

positive regulation of transport

3

16

0.04

GO:0030334

regulation of cell migration

3

17

0.04

GO:0030335

positive regulation of cell migration

3

9

0.01

GO:0040012

regulation of locomotion

3

17

0.04

GO:0040017

positive regulation of locomotion

3

9

0.01

GO:0051270

regulation of cellular component movement

3

20

0.07

  1. Gene ontology (GO) identifiers over represented in genes found differentially expressed following infection depending on prior feeding regime. For this analysis both increased and decreased genes were included. 1Gene ontology identifier, 2Gene Ontology term, 3number of times the GO term is present in the gene list, 4number of times the GO term is present on the filtered array list, 5statistical enrichment for GO term. Only GO terms that appear 3 or more times are shown.