Table 3 Three common repeats were assembled from a pool of 21 million WGS reads representing 3.9% of the P. taeda genome.
From: The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
| Â | No. reads | TPE1/copia | PtIFG7 | cen-rpt | tel-rpt* |
|---|---|---|---|---|---|
No. WGS reads | 2100000 | 330219 | 281712 | 57524 | 50494 |
Est. genome portion | 3.5% | 1.57% | 1.34% | 0.27% | 0.24% |
Total base pairs | 87,000,000 | 350000000 | 300000000 | 60000000 | 53000000 |
Est. element length | -- | 4200 | 4000 | 50 | 7 |
Est. copies in genome | -- | 82000 | 74000 | -- | -- |
Ave. no./chromosome | -- | 6900 | 6100 | -- | -- |
Ave. bp/chromosome | 36000000 | 29200000 | 25000000 | 2500000 | 22000000 |