From: Characteristics of linkage disequilibrium in North American Holsteins
Chromosome | N | Length (Mb) | Spacing (kb) | Mean r2 | SD (r2) | Median r2 | Mean |D'| | SD |D'| | Median |D'| | MAF |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2,443 | 158 | 64 | 0.22 | 0.25 | 0.11 | 0.73 | 0.32 | 0.90 | 0.28 |
2 | 1,970 | 136 | 69 | 0.22 | 0.25 | 0.11 | 0.70 | 0.33 | 0.85 | 0.29 |
3 | 1,859 | 121 | 65 | 0.22 | 0.25 | 0.12 | 0.73 | 0.33 | 0.90 | 0.29 |
4 | 1,804 | 120 | 66 | 0.20 | 0.23 | 0.10 | 0.70 | 0.34 | 0.86 | 0.29 |
5 | 1,603 | 121 | 75 | 0.20 | 0.24 | 0.10 | 0.71 | 0.33 | 0.87 | 0.29 |
6 | 1,848 | 119 | 64 | 0.21 | 0.25 | 0.11 | 0.70 | 0.33 | 0.85 | 0.29 |
7 | 1,615 | 112 | 69 | 0.23 | 0.25 | 0.13 | 0.71 | 0.32 | 0.86 | 0.29 |
8 | 1,721 | 113 | 65 | 0.21 | 0.25 | 0.11 | 0.73 | 0.32 | 0.89 | 0.28 |
9 | 1,487 | 105 | 70 | 0.20 | 0.23 | 0.10 | 0.70 | 0.33 | 0.85 | 0.28 |
10 | 1,559 | 104 | 66 | 0.21 | 0.24 | 0.12 | 0.71 | 0.32 | 0.84 | 0.29 |
11 | 1,654 | 107 | 64 | 0.20 | 0.23 | 0.10 | 0.70 | 0.33 | 0.85 | 0.29 |
12 | 1,260 | 91 | 72 | 0.20 | 0.24 | 0.10 | 0.70 | 0.33 | 0.84 | 0.28 |
13 | 1,319 | 84 | 63 | 0.21 | 0.24 | 0.12 | 0.72 | 0.33 | 0.90 | 0.30 |
14 | 1,326 | 84 | 62 | 0.23 | 0.26 | 0.13 | 0.72 | 0.32 | 0.88 | 0.30 |
15 | 1,267 | 85 | 66 | 0.19 | 0.23 | 0.09 | 0.70 | 0.33 | 0.87 | 0.29 |
16 | 1,166 | 81 | 69 | 0.22 | 0.25 | 0.12 | 0.72 | 0.32 | 0.88 | 0.29 |
17 | 1,194 | 74 | 62 | 0.19 | 0.23 | 0.10 | 0.72 | 0.32 | 0.87 | 0.29 |
18 | 1,013 | 65 | 64 | 0.18 | 0.22 | 0.09 | 0.66 | 0.34 | 0.78 | 0.30 |
19 | 1,039 | 64 | 61 | 0.19 | 0.23 | 0.10 | 0.70 | 0.33 | 0.85 | 0.29 |
20 | 1,126 | 71 | 63 | 0.21 | 0.23 | 0.12 | 0.72 | 0.31 | 0.85 | 0.29 |
21 | 1,031 | 71 | 69 | 0.20 | 0.24 | 0.10 | 0.68 | 0.33 | 0.81 | 0.30 |
22 | 965 | 61 | 63 | 0.19 | 0.25 | 0.09 | 0.69 | 0.33 | 0.82 | 0.28 |
23 | 818 | 52 | 63 | 0.18 | 0.22 | 0.09 | 0.64 | 0.35 | 0.74 | 0.30 |
24 | 922 | 62 | 67 | 0.20 | 0.24 | 0.10 | 0.68 | 0.33 | 0.82 | 0.29 |
25 | 770 | 42 | 55 | 0.20 | 0.23 | 0.11 | 0.68 | 0.33 | 0.79 | 0.30 |
26 | 804 | 51 | 63 | 0.18 | 0.24 | 0.08 | 0.67 | 0.34 | 0.82 | 0.28 |
27 | 745 | 45 | 60 | 0.17 | 0.22 | 0.07 | 0.66 | 0.34 | 0.77 | 0.29 |
28 | 731 | 46 | 63 | 0.17 | 0.20 | 0.09 | 0.65 | 0.34 | 0.73 | 0.30 |
29 | 811 | 51 | 63 | 0.17 | 0.22 | 0.09 | 0.68 | 0.33 | 0.79 | 0.29 |
X | 690 | 148 | 215 | 0.18 | 0.23 | 0.08 | 0.59 | 0.33 | 0.63 | 0.29 |
All | 38,560 | 2656 | 68 | 0.20 | 0.24 | 0.11 | 0.70 | 0.33 | 0.85 | 0.29 |