Table 1 Recombination analysis
From: The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution
DNA polymorphism analysis | Sawyers test for recombination | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
GROUP | Number of VSPs | BP | GAPS | POLYMORPHISMS (%) | SINGLE VAR SITES | Pi-Value | Inner frags | Best inner p-val | Best inner BC-val | Outer frags | Best outer p-val | Best outer BC-val |
All (1&2) | 12 | 234 | 0 | 174 (74.36) | 42 | 0.3403 | 26 | 0.0000 | 0.0007 | 0 | N/A | N/A |
clade1 | 8 | 234 | 0 | 151 (64.52) | 85 | 0.2599 | 16 | 0.0000 | 0.0002 | 1 | 0.0027 | 0.0311 |
clade2 | 4 | 234 | 0 | 59 (25.21) | 50 | 0.1467 | 4 | 0.0008 | 0.0073 | 4 | 0.0011 | 0.0071 |
longClade | 13 | 657 | 0 | 153 (23.28) | 17 | 0.0865 | 41 | 0.0000 | 0.0000 | 1 | 0.0365 | 0.3755 |
All (3 & 4) | 7 | 546 | 0 | 143 (26.19) | 14 | 0.1347 | 10 | 0.0000 | 0.0002 | 1 | 0.0013 | 0.0114 |
clade3 | 3 | 546 | 0 | 95 (17.4) | 95 | 0.1160 | 2 | 0.0000 | 0.0002 | 2 | 0.0000 | 0.0002 |
clade4 | 4 | 546 | 0 | 110 (20.14) | 72 | 0.1178 | 6 | 0.0048 | 0.0268 | 2 | 0.0195 | 0.1069 |