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Table 2 High-throughput sequencing of sRNAs in some plants

From: Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

Species

Tissues

Techniques

Redundant reads

(× 104)

Unique reads

(× 104)

Reference

Arabidopsis

Inflorescence and seedling

MPSS

221.01

10.48

Science, 2005, 309 (5740): 1567-1569

 

Mixture materials of all developmental stages

454-FLX

88.70

34.00

Genes & Development, 2006, 20 (24): 3407-3425

 

Wild-type Arabidopsis inflorescence

MPSS

72.10

6.75

Genome Research, 2006, 16 (10): 1276-1288

 

Inflorescence of rdr2 mutant

MPSS

91.59

1.53

 
 

Wild-type Arabidopsis and dcl1-7, dcl2-1 and dcl3-1 mutant

454-FLX

47.04

21.86

PLoS ONE, 2007, 2 (2): e219.

Rice

Inflorescence, shoot and seedling

MPSS

295.39

28.43

Nature Biotechnology, 2007, 25 (4):473-477

 

Mixture materials of all developmental stages

454-FLX

9.23

1.28

Nucleic Acids Research, 2007, 35: 829-833

 

Wild-type rice seedling

454-FLX

71.42

5.88

BMC Plant Biology, 2008, 8: 25

 

Seedling treated with salt stress

  

4.30

 
 

Seedling treated with drought

  

8.10

 

Populus

Leaf

454-FLX

4.13

0.60

BMC Genomics, 2007, 8: 481

 

Bud

 

3.56

0.63

 

Wheat

Mixture of leaf, root and spike

454-FLX

26.30

25.25

Genome Biology, 2007, 8 (6): R96

Soybean

Wild-type soybean root

454-FLX

15.91

 

BMC Genomics, 2008, 9: 160

 

japonicum-inoculated soybean roots

 

19.49

  

Tomato

Fruit Leaf

454-FLX

53.70 18.48

2.25 10.28

Genome Research, 2008, 18(10): 1602-1609

Maize

Wild-type maize spike

Solexa

560.00

 

Proceedings of the National Academy of Sciences of the USA, 2008, 105 (39): 14958-14963

 

mop1-1 mutant

 

720.00

  

C. trifoliata

flower buds, flowers, fruits

Solexa

1310.7

487.6

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