Skip to main content

Table 2 Evaluation of the five major discrepancies between GenBank annotation and Bcheck results.

From: Bcheck: a wrapper tool for detecting RNase P RNA genes

Organism

RfamCM scores

Discrepancy

 

GenBank

Bcheck

  

M. acetivorans

-63.35

167.88

 

P1, P7

A. cellulolyticus

-132.16

221.11

 

all

E. coli(CFT073)

-72.51

282.72

 

most

R. typhi wilmington

-97.66

264.53

 

P1, P3, P9, P10

B. halodurans

-110.59

300.87

 

P1, P9

  1. Rfam scores are bit-scores for Infernal using Rfam's CM models. The discrepancies column lists features missing in the region annotated in GenBank.