Table 1 Characteristics of the BES-SSR identified
From: Integration of physical and genetic maps of common bean through BAC-derived microsatellite markers
Repeat type | Motif1 | Total SSR | Monomorfic2 | Polymorfic | ||
|---|---|---|---|---|---|---|
Class I3 | Class II | Class I | Class II | |||
Di-nucleotide | AT/TA | 100 | 20% (20) | 3% (3) | 67% (67) | 10% (10) |
AC/TG | 5 | 40% (2) | 20% (1) | 40% (2) | - | |
AG/TC | 27 | 40.7% (11) | 7.4% (2) | 33.3% (9) | 18.5% (5) | |
Subtotal | 132 | 25% (33) | 4.5% (6) | 59.1% (78) | 11.4% (15) | |
Tri-nucleotide | ATA/TAT | 24 | 16.6% (4) | 37.5% (9) | 29.2% (7) | 16.7% (4) |
AGA/TCT | 14 | - | 35.7% (5) | 21.4% (3) | 42.8% (6) | |
AGC/TCG | 2 | - | 100% (2) | - | - | |
AGT/TCA | 3 | - | 66.7% (2) | - | 33.3% (1) | |
GGT/CCA | 1 | - | 100% (1) | - | - | |
Subtotal | 44 | 9.1% (4) | 43.2% (19) | 22.7% (10) | 25% (11) | |
TOTAL | 176 | 21% (37) | 14.2% (25) | 50% (88) | 14.8% (26) | |