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Table 5 QPCR analysis of the expression of candidate genes resulting from microarray studies comparing Tg37xNFH-Cre versus Tg37 mice.

From: Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse

Genes

Tg37xNFH-Cre

Tg37xNFH-Cre

 
 

Microarray

QPCR

Protein

 

(log2 ratio)

(ΔΔ CT)

 

10 weeks

   

Glrx3

-0.6

0.34

glutaredoxin 3

Atp13a1

0.81

-0.08

ATPase type 13A1

Prnp Tg37

ND

-5.62

Prion protein

14 weeks

   

AV451297.1

-2.62

-0.02

Hypothetical protein

Ifitm3

-1.41

-0.12

Interferon-induced transmembrane protein 3

Erf1

-1.19

-1.12

Eukaryote class I release factor

Bace1

-0.48

-0.02

beta-site APP-cleaving enzyme 1

BB217622.2

0.81

0.64

Unknown

Riken D17

0.79

0.31

Unknown

Fgf2

0.48

0.47

fibroblast growth factor 2

Prnp Tg37

ND

-6.43

Prion protein

  1. Differentially expressed genes detected by the microarray analysis are listed with the calculated differential ratio (log2) alongside the observed delta-delta CT resulting from the QPCR experiment. The comparative Ct method is known as the 2 - [delta][delta]Ct method, where delta delta Ct = [delta]Ct, sample - [delta]Ct, reference. Age of the analyzed mice is mentioned.