A complete DNA sequence map of the ovine Major Histocompatibility Complex

BMC Genomics

Table 2 List of non-protein-codning microRNA genes identified in MHC by Rfam analysis

Gene Name	Rfam Accession No.	Start coordinate	End coordinate	Orientation	Score^a
let-7	RF00027	35	51	+	34.2
miR-160	RF00247	173327	173343	+	34.2
miR-156	RF00073	180706	180722	-	34.2
miR-17	RF00051	243137	243153	-	34.2
miR-166	RF00075	465267	465295	+	34.2
miR-166	RF00075	1062114	1062131	-	36.2
miR-2	RF00047	1243062	1243078	+	34.2
lin-4	RF00052	1608564	1608580	+	34.2
miR-10	RF00104	1978042	1978059	+	36.2
miR-101	RF00253	2046800	2046816	+	34.2
miR-395	RF00451	2082358	2082373	-	32.2
miR-156	RF00073	2084006	2084023	-	36.2
miR-219	RF00251	2098884	2098955	-	127
miR-219	RF00251	2098930	2098950	-	42.1
miR-156	RF00073	2131290	2131307	-	36.2
miR-156	RF00073	2339014	2339030	+	34.2
miR-166	RF00075	2348202	2348217	-	32.2
miR-399	RF00445	2354071	2354086	+	32.2

^a The scores are bits (logs-odds) scores which represent the log of the probability of the query given the model over the probility of random sequence given the model.

ISSN: 1471-2164