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Table 1 Summary of DNA in silico digestion of soybean genome assembly

From: SNP discovery by high-throughput sequencing in soybean

Enzyme # total fragments # selected fragments (70-200 bp) total length complexity reduction % coverage for one run sequence density per Mbp putative SNP # % selected portion # repetitive in selected fragments % selected fragments containing repetitive elements
Acc II 454,161 72,612 9,221,724 0.84 208.66 132.02 958.48 15.98 2332 0.51
Hae III 1,342,945 265,289 33,691,703 3.06 57.11 482.34 3,501.81 19.75 12,089 0.90
Rsa I 1,731,973 334,265 42,451,655 3.86 45.33 607.75 4,412.30 19.29 26,105 1.51
Dpn I 2,475,326 594,055 75,444,985 6.86 25.51 1,080.10 7,841.53 23.99 62,906 2.54
Alu I 2,929,186 841,548 106,876,596 9.72 18.00 1,530.09 11,108.43 28.72 66,175 2.26
CviR I 4,267,589 1,367,611 173,686,597 15.79 11.08 2,486.57 18,052.47 32.04 140,580 3.29
CviJ I 8,002,903 2,470,067 313,698,509 28.52 6.13 4,491.03 32,604.88 30.86 189,866 2.37