From: Gill transcriptome response to changes in environmental calcium in the green spotted puffer fish
Category | Differentially expressed transcript (tag) annotation | |
---|---|---|
Calcium binding proteins (CaBP) | ACTN3, α actinin 3 | MYL4, Myosin light chain 4 * |
 | AT2A1, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | MYL6, Myosin light polypeptide 6 |
 | CAN2, Calpain-2 catalytic subunit * | PERE, Eosinophil peroxidase |
 | CASQ1, Calsequestrin-1 | PERF, Perforin-1 |
 | CLC4 M, C-type lectin domain family 4 member M | PRVB, Parvalbumin β * |
 | CPNS1, Calpain small subunit 1 * | S10A5, Protein S100-A5 |
 | CRP, C-reactive protein | S10AD, Protein S100-A13 * |
 | DNSL3, Deoxyribonuclease gamma | S10I, Ictacalcin |
 | ELA1, Elastase-1 | SCUB2, Signal peptide, CUB and EGF-like domain-containing protein 2 |
 | ENTK, Enteropeptidase | SRCA, Sarcalumenin |
 | EVPL, Envoplakin | TITIN, Titin |
 | FBLN5, Fibulin-5 | TKTL1, Transketolase-like protein 1 |
 | HORN, Hornerin | TNNC1, Troponin C, slow skeletal and cardiac muscles |
 | MLE3, Myosin light chain 3, skeletal muscle isoform * | TNNC2, Troponin C, skeletal muscle |
 | MLRS, Myosin regulatory light chain 2, skeletal muscle isoform * | YRK, Proto-oncogene tyrosine-protein kinase Yrk |
Transcription factors (TF) | CEBPA, CCAAT/enhancer-binding protein α | JUN, Transcription factor AP-1 |
 | DMRT1, Doublesex- and mab-3-related transcription factor 1 | JUND, Transcription factor jun-D |
 | EGR1, Early growth response protein 1 | KLF10, Krueppel-like factor 10 |
 | ETV6, Transcription factor ETV6 | MED21, Mediator of RNA polymerase II transcription subunit 21 |
 | FOS, Proto-oncogene protein c-fos | NDK, Nucleoside diphosphate kinase |
 | HM20B, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related | USF2, Upstream stimulatory factor 2 |
 | JAD1B, Histone demethylase JARID1B | YBOX1, Nuclease-sensitive element-binding protein 1 |
Other regulators of transcription | DNMT1, DNA (cytosine-5)-methyltransferase 1 | RAN, GTP-binding nuclear protein Ran |
 | FUBP2, Far upstream element-binding protein 2 | SMYD1, SET and MYND domain-containing protein 1 |
 | HSBP1, Heat shock factor-binding protein 1 | TNNI2, Troponin I, fast skeletal muscle |
 | LEP, Leptin | TRI16, Tripartite motif-containing protein 16 |
 | MURC, Muscle-related coiled-coil protein | TXNIP, Thioredoxin-interacting protein |
 | NC2B, Protein Dr1 | UBIQ, Ubiquitin |
 | PAR15, Poly [ADP-ribose] polymerase 15 | ZEP1, Zinc finger protein 40 |
Components of signal transduction pathways/intracellular signaling | 1433B, 14-3-3 protein β/α | MK12, Mitogen-activated protein kinase 12 |
 | ACHA4, Neuronal acetylcholine receptor subunit α 4 | P2RY8, P2Y purinoceptor 8 |
 | APOEB, Apolipoprotein Eb | PA24C, Cytosolic phospholipase A2 gamma |
 | ARF4, ADP-ribosylation factor 4 | PARPT, TCDD-inducible poly [ADP-ribose] polymerase |
 | ARHGJ, Rho guanine nucleotide exchange factor 19 | PDK4, Pyruvate dehydrogenase [lipoamide] kinase isozyme 4, mitochondrial |
 | ARL1, ADP-ribosylation factor-like protein 1 | PIN1, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 |
 | C42S1, CDC42 small effector protein 1 | RAB7A, Ras-related protein Rab-7a |
 | CAP1, Adenylyl cyclase-associated protein 1 | RAC2, Ras-related C3 botulinum toxin subste 2 |
 | CEBPA, CCAAT/enhancer-binding protein α (TF) | RAN, GTP-binding nuclear protein Ran |
 | CLC4 M, C-type lectin domain family 4 member M | RGS1, Regulator of G-protein signaling 1 |
 | CML1, Chemokine receptor-like 1 | RGS2, Regulator of G-protein signaling 2 |
 | CNIH, Protein cornichon homolog | RND2, Rho-related GTP-binding protein RhoN |
 | CO1A1, Collagen α1(I) chain | S10I, Ictacalcin |
 | CO1A2, Collagen α2(I) chain | SCUB2, Signal peptide, CUB and EGF-like domain-containing protein 2 |
 | EBI2, EBV-induced G-protein coupled receptor 2 homolog | SOCS3, Suppressor of cytokine signaling 3 |
 | EPHA2, Ephrin type-A receptor 2 | STMN1, Stathmin |
 | FIBP, Acidic fibroblast growth factor intracellular-binding protein | TACD2, Tumor-associated calcium signal transducer 2 |
 | FOS, Proto-oncogene protein c-fos (TF) | TITIN, Titin |
 | GRN, Granulins | TRI16, Tripartite motif-containing protein 16 |
 | HG2A, HLA class II histocompatibility antigen gamma chain | UROK, Urokinase-type plasminogen activator |
 | HINT1, Histidine triad nucleotide-binding protein 1 | VANG2, Vang-like protein 2 |
 | IMPA1, Inositol monophosphatase | YRK, Proto-oncogene tyrosine-protein kinase Yrk |
 | JUN, Transcription factor AP-1 (TF) |  |
 | KLF10, Krueppel-like factor 10 (TF) |  |
 | MGST3, Microsomal glutathione S-transferase 3 |  |
Ion transporters and other proteins related to ion homeostasis or osmoregulation | ACHA4, Neuronal acetylcholine receptor subunit α4 | CLIC4, Chloride intracellular channel protein 4 |
 | AQP3, Aquaporin-3 | COX17, Cytochrome c oxidase copper chaperone |
 | AT2A1, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | FRIH, Ferritin, heavy subunit |
 | CAH1, Carbonic anhydrase 1 | FRIM, Ferritin, middle subunit |
 | CAHZ, Carbonic anhydrase | NUDT9, ADP-ribose pyrophosphatase, mitochondrial |
 | CLDN28a, Claudin 28a | PLM, Phospholemman |
 | CLDN32a, Claudin 32a | S4A11, Sodium bicarbonate transporter-like protein 11 |
 | CLDN38 D, Claudin 8d | SGK1, Serine/threonine-protein kinase Sgk1 |
 | CLDN3a, Claudin 3a | VDAC2, Voltage-dependent anion-selective channel protein 2 |