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Table 5 Frequency and features of the repeat elements identified in A. actinomycetemcomitans

From: Markedly different genome arrangements between serotype a strains and serotypes b or c strains of Aggregatibacter actinomycetemcomitans

Repeat ID

Estimated

length

(bp)

Features

Frequency

in D7S-1

Genome

Frequency

in HK1651

Genome

Frequency

in D11S-1

Genome

REPEAT01

6505

rRNA genes operon

6

6

6

REPEAT02

1269

IS150 like element

8

7

5

REPEAT03

717

IS200 like element

0

4

5

REPEAT04

139

Unknown

1

5

5

REPEAT05

6326

FHA domain protein

2

0

0

REPEAT06

4315

WD-40 repeat, Hypothetical protein and FHA domain protein

2

0

0

REPEAT07

2156

Sel1 domain protein repeat-containing protein

4

0

0

REPEAT08

2008

Rhs element Vgr protein

6

0

0

REPEAT09

1523

Glycoside hydrolase, family 19 gene

5

0

0

REPEAT10

1254

FHA domain protein

2

0

0

REPEAT11

1227

Tra5 Protein

6

0

0

REPEAT12

1060

IS30 like element

3

0

0

REPEAT13

1225

Translation elongation factor Tu

2

2

2

REPEAT14

837

Putative FHA domain protein

4

0

0

REPEAT15

690

IS427 like element

4

0

0

REPEAT16

472

Sel1 domain protein repeat-containing protein

7

0

0

REPEAT17

387

Hypothetical protein

10

0

0

REPEAT18

219

Unknown

8

4

2

REPEAT19

162

Hypothetical protein

7

1

1

REPEAT20

100

Unknown

7

5

5

REPEAT21

135

Autotransporter adhesin Aae

4

3

2