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Table 6 Small regulatory RNAs absent or divergent in LIII genomes

From: Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

RNA

Regulation1

Distribution in lineage III2

  

IIIA

IIIB

IIIC

  

J2-071

F2-501

F2-524

J1-208

W1-111

M1-002

F2-569

F2-208

W1-110

rli62

n/a

-

-

-

-

-

+

-

-

-

rliG

n/a

-

-

-

-

-

-

-

+

-

rli38

↑ in broth & blood

+

-

-

-

-

-

-

-

+

rli48

↑ in intestine

-

-

-

-

-

+

-

+

-

rli26

↑ in blood

+

+

+

-

-

-

-

-

-

rli29

↑ in intestine & blood

-

-

-

+

-

+

+

-

-

rli49

n/a

-

-

-

-

-

-

-

-

-

rliC

↓ in blood

+

+

+

-

-

-

-

-

+

  1. 1Up-regulated "↑", or down-regulated "↓" in vivo [45]; n/a, information not available.
  2. 2Gene is either present "+" or absent "-" in a LIII genome.
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BMC Genomics

ISSN: 1471-2164

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